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Target PredictionTarget GenemiRNA PredictionExpression ProfilesInteractionsRegulatory NetworkAssociationCancer/TumorDiseaseNext Generation Sequencing (NGS)IdentificationmiRNA Binding SitesiRNApre-miRNAIntegrated AnalysisThe Cancer Genome Atlas (TCGA)Functional AnnotationTranscription Factors (TFs)miRNA-SeqPathwaymiRNA AnnotationssncRNASequence AnnotationEnrichment AnalysislncRNADifferential Expression3'/5' UTRIsomiRSecondary StructureSingle Nucleotide Polymorphism (SNP)RNAincRNAsRNA-SeqAlignmentmiRNA RegulationTissue-specific miRNAClassificationMicroarray AnalysisIntegrated KnowledgeOff-targetsCLIP-SeqIntegration of ToolsVisualizationEvolutionGene OntologyceRNAExperimentally ValidatedpiRNARNA-binding Protein (RBP)miRNA FamilyArgonaute (AGO)BiomarkerCircRNADrugCo-expressedTissuesmiRNA HomologsID ConversionIntergenic/Intronic miRNAPhenotypeProtein-protein Interaction (PPI)Secreted/Extracellular/Circulating miRNAThermodynamicsHairpin StructureSequence MotifmiRNA ClusterCoding Sequence (CDS)NormalizationPAR-CLIPRNA EditingSeed MatchTools GalleryTranscriptional Start Sites (TSSs)Alzheimer's DiseaseCis-regulatory ElementMutationPseudo HairpinBloodChemicalCorrelation AnalysisExpressed Sequence Tag (EST)Genome Wide Association Study (GWAS)High-throughput Screening (HTS)RNA Modification3'/5' ModificationsArm SwitchingEnvironmental FactorEpigeneticExosomeExpression Quantitative Trait Loci (eQTL)Free EnergymiRNA ActivityParkinson's DiseaseSequential MappingStem CellTransposable ElementsAlternatively Spliced TranscriptsArtificial miRNACleavage SitesNomenclaturePromoterSequential TrimmingStressTertiary/Triplex/3D StructuresAntisenseAutophagyChIP-SeqCLASHIntragenic miRNAMethylationmiRNA PublicationAdipogenesisCRISPR-Cas9DNase-SeqEpilepsyExtracellular Vesicles (EVs)Huntington's diseaseHybridizationImmunostimulatoryOntology

Implement Technique

PHPMySQLPerlRJavaPythonJavaScriptC/C++JSPJQueryMATLABBioconductorCytoscape.jsBootstrapPostgreSQLDjangoCRAND3.jsRESTfulRubyC#HTML5BioperlBashCytoscapeSQLiteAngularJSNoSQLShinyASP .NET

Methods

Support Vector Machines (SVM)Manually CuratedRandom ForestText MiningHypergeometric TestLinear Regression Analysisk-Nearest Neighbour (kNN)Survival AnalysisArtificial Neural Network (ANN)Hidden Markov Model (HMM)k-MeansMeta-analysisLASSOMutual InformationBoostingRandom WalkDynamic Programming AlgorithmsHierarchical ClusteringLogistic RegressionNaive BayesPrincipal Component Analysis (PCA)Analysis of Variance (ANOVA)EntropyExpectation Maximisation (EM)Self-Organizing Map (SOM)Smith-Waterman AlgorithmBayesian Network (BN)C4.5Decision TreeInformation GainAdaBoostBiclusteringConvolutional Neural Network (CNN)SemanticBayesian InferenceBayesian StatisticsBurrows-Wheeler Transform (BWT)Genetic Algorithms (GA)Markov Cluster (MCL)Minimal Redundancy Maximal Relevance (MRMR)Non-negative Matrix Factorization (NMF)Support Vector Regression (SVR)SVM-RFEBetweenness Centrality Clustering (BCC)Bicliques MergingComplete-linkage ClusteringConditional Random Fields (CRFs)Deep Belief Network (DBN)Empirical AlgorithmicsEmpirical Bayes Methods

Taxonomy Category

Implementation Technology Count
PHP 236
MySQL 210
Perl 172
R 158
Java 129
Python 116
JavaScript 105
C/C++ 68
JSP 48
JQuery 39
MATLAB 29
Bioconductor 20
Cytoscape.js 16
Bootstrap 15
PostgreSQL 15
Django 13
CRAN 12
RESTful 11
Ruby 11
D3.js 11
HTML5 10
C# 10
Bioperl 9
Bash 8
SQLite 7
Cytoscape 7
NoSQL 5
Shiny 5
AngularJS 5
ASP .NET 4
Node.js 4
Rails 4
Oracle 4
BioJava 4
MongoDB 4
SQL Server 3
Pascal 2
Laravel 2
SOAP 2
Ext JS 2
Mako 2
Flask 2
Play Framework 2
HSQLDB 1
Arfooo 1
CodeIgniter 1
Neo4j 1
Symfony 1
Awk 1
CUDA 1
Start 1 to 50 of 63 entries
Species Count
Arabidopsis 226
Bacteria 99
C. elegans 199
Chicken 167
Fruitfly 218
Human 812
Maize 150
Mouse 359
Other Species 299
Rat 232
Start 1 to 10 of 17 entries
Platforms Count
Linux/Unix 330
MAC OS 308
Web Based 725
Windows 250
Status Count
Active 918
Dead 117