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Taxonomy Category

Terms Count
Target Prediction 208
Target Gene 150
miRNA Prediction 144
Expression Profiles 135
Interactions 127
Regulatory Network 118
Association 98
Cancer/Tumor 87
Disease 82
Next Generation Sequencing (NGS) 75
Identification 71
miRNA Binding Site 67
siRNA 66
pre-miRNA 53
Integrated Analysis 51
The Cancer Genome Atlas (TCGA) 51
Functional Annotation 46
Transcription Factors (TFs) 44
miRNA-Seq 43
Pathway 43
miRNA Annotations 40
sncRNA 39
Sequence Annotation 38
Enrichment Analysis 37
lncRNA 37
Differential Expression 35
3'/5' UTR 30
IsomiR 30
Secondary Structure 29
Single Nucleotide Polymorphism (SNP) 29
RNAi 28
RNA-Seq 26
ncRNAs 26
Alignment 24
miRNA Regulation 24
Tissue-specific miRNA 22
Microarray Analysis 21
Classification 21
Integrated Knowledge 19
Off-targets 19
CLIP-Seq 18
Visualization 18
Integration of Tools 18
Gene Ontology 17
Evolution 17
piRNA 15
ceRNA 15
Experimentally Validated 15
RNA-binding Protein (RBP) 15
miRNA Family 14
Argonaute (AGO) 14
Drug 13
Biomarker 13
CircRNA 13
Co-expressed 12
Tissues 12
miRNA Homologs 11
Phenotype 10
Intergenic/Intronic miRNA 10
ID Conversion 10
Secreted/Extracellular/Circulating miRNA 9
Protein-protein Interaction (PPI) 9
Thermodynamics 9
Sequence Motif 8
Hairpin Structure 8
Tools Gallery 7
Transcriptional Start Sites (TSSs) 7
Seed Match 7
miRNA Cluster 7
Normalization 7
Coding Sequence (CDS) 7
RNA Editing 7
PAR-CLIP 7
Mutation 6
Pseudo Hairpin 6
Alzheimer's Disease 6
Cis-regulatory Element 6
Blood 5
Genome Wide Association Study (GWAS) 5
Correlation Analysis 5
High-throughput Screening (HTS) 5
Chemical 5
RNA Modification 5
Expressed Sequence Tag (EST) 5
Expression Quantitative Trait Loci (eQTL) 4
miRNA Activity 4
3'/5' Modifications 4
Free Energy 4
Stem Cell 4
Environmental Factor 4
Transposable Elements 4
Epigenetic 4
Exosome 4
Sequential Mapping 4
Parkinson's Disease 4
Arm Switching 4
Artificial miRNA 3
Cleavage Sites 3
Stress 3
Promoter 3
Nomenclature 3
Alternatively Spliced Transcripts 3
Tertiary/Triplex/3D Structures 3
Sequential Trimming 3
Methylation 2
CLASH 2
Autophagy 2
Intragenic miRNA 2
Antisense 2
ChIP-Seq 2
miRNA Publication 2
DNase-Seq 1
Small Molecules 1
Extracellular Vesicles (EVs) 1
Immunostimulatory 1
Adipogenesis 1
Epilepsy 1
Ontology 1
CRISPR-Cas9 1
Huntington's disease 1
Hybridization 1
Methods Count
Support Vector Machines (SVM) 92
Manually Curated 56
Random Forest 28
Text Mining 26
Hypergeometric Test 13
Linear Regression Analysis 12
Survival Analysis 10
k-Nearest Neighbour (kNN) 10
k-Means 9
Meta-analysis 9
Artificial Neural Network (ANN) 9
Hidden Markov Model (HMM) 9
LASSO 8
Mutual Information 8
Boosting 7
Random Walk 7
Principal Component Analysis (PCA) 6
Naive Bayes 6
Dynamic Programming Algorithms 6
Hierarchical Clustering 6
Logistic Regression 6
Entropy 5
Expectation Maximisation (EM) 5
Analysis of Variance (ANOVA) 5
Self-Organizing Map (SOM) 5
Smith-Waterman Algorithm 5
Information Gain 4
C4.5 4
Bayesian Network (BN) 4
Decision Tree 4
AdaBoost 3
Convolutional Neural Network (CNN) 3
Semantic 3
Biclustering 3
Support Vector Regression (SVR) 2
Markov Cluster (MCL) 2
Burrows-Wheeler Transform (BWT) 2
SVM-RFE 2
Minimal Redundancy Maximal Relevance (MRMR) 2
Bayesian Inference 2
Genetic Algorithms (GA) 2
Bayesian Statistics 2
Non-negative Matrix Factorization (NMF) 2
Penalized Generalized Estimating Equations (PGEE) 1
Markov Model 1
k-Medians 1
Markov-Chain Monte-Carlo Methods (MCMC) 1
Fisher's Exact Test 1
Complete-linkage Clustering 1
FP-growth Algorithm 1
Kemeny Optimal Aggregation (KOA) 1
Wang-Landau Monte Carlo Methods 1
Conditional Random Fields (CRFs) 1
Gaussian Naive Bayes 1
Kolmogorov–Smirnov Test 1
Molecular Dynamics 1
Semi-Automatic Extraction 1
Grid Search Method (PGS) 1
Deep Belief Network (DBN) 1
Singular Value Decomposition (SVD) 1
Literature-based Discovery 1
Betweenness Centrality Clustering (BCC) 1
Bicliques Merging 1
PageRank 1
Empirical Algorithmics 1
Particle Swarm Optimization (PSO) 1
Empirical Bayes Methods 1
Species Count
Arabidopsis 226
Bacteria 99
C. elegans 199
Chicken 167
Fruitfly 218
Human 812
Maize 150
Mouse 359
Other Species 299
Rat 232
Rice 183
Soybean 139
Tomato 138
Virus 119
Wheat 133
Xenopus 128
Zebrafish 178
Platforms Count
Linux/Unix 330
MAC OS 308
Web Based 725
Windows 250
Status Count
Active 918
Dead 117