A survey of software tools for microRNA discovery and characterization using RNA-seq.
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2017. A survey of software tools for microRNA discovery and characterization using RNA-seq.. Brief Bioinform.
Review papers
A review of databases predicting the effects of SNPs in miRNA genes or miRNA-binding sites.
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2017. A review of databases predicting the effects of SNPs in miRNA genes or miRNA-binding sites.. Brief Bioinform.
A compilation of Web-based research tools for miRNA analysis.
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2017. A compilation of Web-based research tools for miRNA analysis.. Brief Funct Genomics. 16(5):249-273.
miRNAs target databases: developmental methods and target identification techniques with functional annotations.
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2017. miRNAs target databases: developmental methods and target identification techniques with functional annotations.. Cell Mol Life Sci. 74(12):2239-2261.
A review of computational approaches detecting microRNAs involved in cancer.
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2017. A review of computational approaches detecting microRNAs involved in cancer.. Front Biosci (Landmark Ed). 22:1774-1791.
Circulating microRNAs and Bioinformatics Tools to Discover Novel Diagnostic Biomarkers of Pediatric Diseases.
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2017. Circulating microRNAs and Bioinformatics Tools to Discover Novel Diagnostic Biomarkers of Pediatric Diseases.. Genes (Basel). 8(9)
Computational tools for plant small RNA detection and categorization.
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2017. Computational tools for plant small RNA detection and categorization.. Brief Bioinform.
Systematic review of computational methods for identifying miRNA-mediated RNA-RNA crosstalk.
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2017. Systematic review of computational methods for identifying miRNA-mediated RNA-RNA crosstalk.. Brief Bioinform.
microRNAs Databases: Developmental Methodologies, Structural and Functional Annotations.
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2017. microRNAs Databases: Developmental Methodologies, Structural and Functional Annotations.. Interdiscip Sci. 9(3):357-377.
Public data and open source tools for multi-assay genomic investigation of disease.
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2016. Public data and open source tools for multi-assay genomic investigation of disease.. Brief Bioinform. 17(4):603-15.
Bioinformatic tools for microRNA dissection.
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2016. Bioinformatic tools for microRNA dissection.. Nucleic Acids Res. 44(1):24-44.
A survey of best practices for RNA-seq data analysis.
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2016. A survey of best practices for RNA-seq data analysis.. Genome Biol. 17:13.
Systematic review of next-generation sequencing simulators: computational tools, features and perspectives.
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2016. Systematic review of next-generation sequencing simulators: computational tools, features and perspectives.. Brief Funct Genomics.
A survey on database resources for microRNA-disease relationships.
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2016. A survey on database resources for microRNA-disease relationships.. Brief Funct Genomics.
Web-based tools for microRNAs involved in human cancer.
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2016. Web-based tools for microRNAs involved in human cancer.. Oncol Lett. 11(6):3563-3570.
Computational challenges, tools, and resources for analyzing co- and post-transcriptional events in high throughput.
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2015. Computational challenges, tools, and resources for analyzing co- and post-transcriptional events in high throughput.. Wiley Interdiscip Rev RNA. 6(3):291-310.
A toolbox for miRNA analysis.
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2015. A toolbox for miRNA analysis.. FEBS Lett. 589(14):1694-701.
Computational Approaches for the Analysis of ncRNA through Deep Sequencing Techniques.
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2015. Computational Approaches for the Analysis of ncRNA through Deep Sequencing Techniques.. Front Bioeng Biotechnol. 3:77.
Effectiveness and Usability of Bioinformatics Tools to Analyze Pathways Associated with miRNA Expression.
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2015. Effectiveness and Usability of Bioinformatics Tools to Analyze Pathways Associated with miRNA Expression.. Cancer Inform. 14:121-30.
