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Found 1346 results
2013
Gudyś A, Szcześniak MWojciech, Sikora M, Makałowska I.  2013.  HuntMi: an efficient and taxon-specific approach in pre-miRNA identification.. BMC Bioinformatics. 14:83.
Mezlini AM, Wang B, Deshwar A, Morris Q, Goldenberg A.  2013.  Identifying cancer specific functionally relevant miRNAs from gene expression and miRNA-to-gene networks using regularized regression.. PLoS One. 8(10):e73168.
Giurato G, De Filippo MRosaria, Rinaldi A, Hashim A, Nassa G, Ravo M, Rizzo F, Tarallo R, Weisz A.  2013.  iMir: an integrated pipeline for high-throughput analysis of small non-coding RNA data obtained by smallRNA-Seq.. BMC Bioinformatics. 14:362.
Wei L, Liao M, Gao Y, Ji R, He Z, Zou Q.  2013.  Improved and Promising Identification of Human MicroRNAs by Incorporating a High-quality Negative Set.. IEEE/ACM Trans Comput Biol Bioinform.
Wrzodek C, Eichner J, Büchel F, Zell A.  2013.  InCroMAP: integrated analysis of cross-platform microarray and pathway data.. Bioinformatics. 29(4):506-8.
Gu J, Xuan Z.  2013.  Inferring the perturbed microRNA regulatory networks in cancer using hierarchical gene co-expression signatures.. PLoS One. 8(11):e81032.
Srivastava S, Wang W, Manyam G, Ordonez C, Baladandayuthapani V.  2013.  Integrating multi-platform genomic data using hierarchical Bayesian relevance vector machines.. EURASIP J Bioinform Syst Biol. 2013(1):9.
Sablok G, Milev I, Minkov G, Minkov I, Varotto C, Yahubyan G, Baev V.  2013.  isomiRex: web-based identification of microRNAs, isomiR variations and differential expression using next-generation sequencing datasets.. FEBS Lett. 587(16):2629-34.
de Oliveira LFelipe Val, Christoff APaula, Margis R.  2013.  isomiRID: a framework to identify microRNA isoforms.. Bioinformatics. 29(20):2521-3.
Ozdemir B, Abd-Almageed W, Roessler S, Wang XWei.  2013.  iSubgraph: integrative genomics for subgroup discovery in hepatocellular carcinoma using graph mining and mixture models.. PLoS One. 8(11):e78624.
Chen X, Slack FJ, Zhao H.  2013.  Joint analysis of expression profiles from multiple cancers improves the identification of microRNA-gene interactions.. Bioinformatics. 29(17):2137-45.
Liu K, Yan Z, Li Y, Sun Z.  2013.  Linc2GO: a human LincRNA function annotation resource based on ceRNA hypothesis.. Bioinformatics. 29(17):2221-2.
Volders P-J, Helsens K, Wang X, Menten B, Martens L, Gevaert K, Vandesompele J, Mestdagh P.  2013.  LNCipedia: a database for annotated human lncRNA transcript sequences and structures.. Nucleic Acids Res. 41(Database issue):D246-51.
Wang Y, Chen L, Chen B, Li X, Kang J, Fan K, Hu Y, Xu J, Yi L, Yang J et al..  2013.  Mammalian ncRNA-disease repository: a global view of ncRNA-mediated disease network.. Cell Death Dis. 4:e765.
Jacobs LAnn, Bewicke-Copley F, Poolman MGraham, Pink RCharles, Mulcahy LAnn, Baker I, Beaman E-M, Brooks T, Caley DPaul, Cowling W et al..  2013.  Meta-analysis using a novel database, miRStress, reveals miRNAs that are frequently associated with the radiation and hypoxia stress-responses.. PLoS One. 8(11):e80844.
Pundhir S, Gorodkin J.  2013.  MicroRNA discovery by similarity search to a database of RNA-seq profiles.. Front Genet. 4:133.
Majoros WH, Lekprasert P, Mukherjee N, Skalsky RL, Corcoran DL, Cullen BR, Ohler U.  2013.  MicroRNA target site identification by integrating sequence and binding information.. Nat Methods. 10(7):630-3.
Rijlaarsdam MA, Rijlaarsdam DJ, Gillis AJM, Dorssers LCJ, Looijenga LHJ.  2013.  miMsg: a target enrichment algorithm for predicted miR-mRNA interactions based on relative ranking of matched expression data.. Bioinformatics. 29(13):1638-46.
Nussbaumer T, Martis MM, Roessner SK, Pfeifer M, Bader KC, Sharma S, Gundlach H, Spannagl M.  2013.  MIPS PlantsDB: a database framework for comparative plant genome research.. Nucleic Acids Res. 41(Database issue):D1144-51.
Lee J, Kim D-I, Park JHyun, Choi I-Y, Shin C.  2013.  MiRAuto: an automated user-friendly microRNA prediction tool utilizing plant small RNA sequencing data.. Mol Cells. 35(4):342-7.
Xie B, Ding Q, Han H, Wu D.  2013.  miRCancer: a microRNA-cancer association database constructed by text mining on literature.. Bioinformatics. 29(5):638-44.
Giles CB, Girija-Devi R, Dozmorov MG, Wren JD.  2013.  mirCoX: a database of miRNA-mRNA expression correlations derived from RNA-seq meta-analysis.. BMC Bioinformatics. 14 Suppl 14:S17.
An J, Lai J, Lehman ML, Nelson CC.  2013.  miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data.. Nucleic Acids Res. 41(2):727-37.
Jha A, Shankar R.  2013.  miReader: Discovering Novel miRNAs in Species without Sequenced Genome.. PLoS One. 8(6):e66857.
Gao D, Middleton R, Rasko JEJ, Ritchie W.  2013.  miREval 2.0: a web tool for simple microRNA prediction in genome sequences.. Bioinformatics. 29(24):3225-6.

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