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Found 1346 results
2014
Berillo O, Régnier M, Ivashchenko A.  2014.  TmiRUSite and TmiROSite scripts: searching for mRNA fragments with miRNA binding sites with encoded amino acid residues.. Bioinformation. 10(7):472-3.
B Suresh V, Roy R, Sahu K, Misra G, Chattopadhyay D.  2014.  Tomato genomic resources database: an integrated repository of useful tomato genomic information for basic and applied research.. PLoS One. 9(1):e86387.
Busk PK.  2014.  A tool for design of primers for microRNA-specific quantitative RT-qPCR.. BMC Bioinformatics. 15:29.
Wu C, Bardes EE, Jegga AG, Aronow BJ.  2014.  ToppMiR: ranking microRNAs and their mRNA targets based on biological functions and context.. Nucleic Acids Res. 42(Web Server issue):W107-13.
Ryvkin P, Leung YYee, Ungar LH, Gregory BD, San Wang L-.  2014.  Using machine learning and high-throughput RNA sequencing to classify the precursors of small non-coding RNAs.. Methods. 67(1):28-35.
Lu Z, A Matera G.  2014.  Vicinal: a method for the determination of ncRNA ends using chimeric reads from RNA-seq experiments.. Nucleic Acids Res. 42(9):e79.
Qureshi A, Thakur N, Monga I, Thakur A, Kumar M.  2014.  VIRmiRNA: a comprehensive resource for experimentally validated viral miRNAs and their targets.. Database (Oxford). 2014
Celiku O, Johnson S, Zhao S, Camphausen K, Shankavaram U.  2014.  Visualizing molecular profiles of glioblastoma with GBM-BioDP.. PLoS One. 9(7):e101239.
Cho A, Shin J, Hwang S, Kim C, Shim H, Kim H, Kim H, Lee I.  2014.  WormNet v3: a network-assisted hypothesis-generating server for Caenorhabditis elegans.. Nucleic Acids Res. 42(Web Server issue):W76-82.
2013
Titov II, Vorozheykin PS.  2013.  Ab initio human miRNA and pre-miRNA prediction.. J Bioinform Comput Biol. 11(6):1343009.
Zheng H, Fu R, Wang J-T, Liu Q, Chen H, Jiang S-W.  2013.  Advances in the techniques for the prediction of microRNA targets.. Int J Mol Sci. 14(4):8179-87.
Jacobsen A, Silber J, Harinath G, Huse JT, Schultz N, Sander C.  2013.  Analysis of microRNA-target interactions across diverse cancer types.. Nat Struct Mol Biol. 20(11):1325-32.
Weng C-W, Lee S-C, Lee Y-L, Ng K-L.  2013.  Analysis of the NCI-60 dataset for cancer-related microRNA and mRNA using expression profiles.. Comput Biol Chem. 44:15-21.
Shao DD, Tsherniak A, Gopal S, Weir BA, Tamayo P, Stransky N, Schumacher SE, Zack TI, Beroukhim R, Garraway LA et al..  2013.  ATARiS: computational quantification of gene suppression phenotypes from multisample RNAi screens.. Genome Res. 23(4):665-78.
Baran-Gale J, Fannin EE, C Kurtz L, Sethupathy P.  2013.  Beta cell 5'-shifted isomiRs are candidate regulatory hubs in type 2 diabetes.. PLoS One. 8(9):e73240.
Khorshid M, Hausser J, Zavolan M, van Nimwegen E.  2013.  A biophysical miRNA-mRNA interaction model infers canonical and noncanonical targets.. Nat Methods. 10(3):253-5.
Madden SF, Clarke C, Gaule P, Aherne ST, O'Donovan N, Clynes M, Crown J, Gallagher WM.  2013.  BreastMark: an integrated approach to mining publicly available transcriptomic datasets relating to breast cancer outcome.. Breast Cancer Res. 15(4):R52.
Samur MKemal, Yan Z, Wang X, Cao Q, Munshi NC, Li C, Shah PK.  2013.  canEvolve: a web portal for integrative oncogenomics.. PLoS One. 8(2):e56228.
Gu Z, Wang J.  2013.  CePa: an R package for finding significant pathways weighted by multiple network centralities.. Bioinformatics. 29(5):658-60.
Xu H, Yu H, Tu K, Shi Q, Wei C, Li Y-Y, Li Y-xue.  2013.  cGRNB: a web server for building combinatorial gene regulatory networks through integrated engineering of seed-matching sequence information and gene expression datasets.. BMC Syst Biol. 7 Suppl 2:S7.
Yang J-H, Li J-H, Jiang S, Zhou H, Qu L-H.  2013.  ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data.. Nucleic Acids Res. 41(Database issue):D177-87.
Barenboim M, Manke T.  2013.  ChroMoS: an integrated web tool for SNP classification, prioritization and functional interpretation.. Bioinformatics. 29(17):2197-8.
Ghosal S, Das S, Sen R, Basak P, Chakrabarti J.  2013.  Circ2Traits: a comprehensive database for circular RNA potentially associated with disease and traits.. Front Genet. 4:283.
Liu C, Mallick B, Long D, Rennie WA, Wolenc A, C Carmack S, Ding Y.  2013.  CLIP-based prediction of mammalian microRNA binding sites.. Nucleic Acids Res. 41(14):e138.
Bindea G, Galon J, Mlecnik B.  2013.  CluePedia Cytoscape plugin: pathway insights using integrated experimental and in silico data.. Bioinformatics. 29(5):661-3.

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