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Found 1346 results
2013
Mohorianu I, Stocks MBenedict, Wood J, Dalmay T, Moulton V.  2013.  CoLIde: a bioinformatics tool for CO-expression-based small RNA Loci Identification using high-throughput sequencing data.. RNA Biol. 10(7):1221-30.
Coronnello C, Benos PV.  2013.  ComiR: Combinatorial microRNA target prediction tool.. Nucleic Acids Res. 41(Web Server issue):W159-64.
Chou C-H, Lin F-M, Chou M-T, Da Hsu S-, Chang T-H, Weng S-L, Shrestha S, Hsiao C-C, Hung J-H, Da Huang H-.  2013.  A computational approach for identifying microRNA-target interactions using high-throughput CLIP and PAR-CLIP sequencing.. BMC Genomics. 14 Suppl 1:S2.
Leclercq M, Diallo ABanire, Blanchette M.  2013.  Computational prediction of the localization of microRNAs within their pre-miRNA.. Nucleic Acids Res. 41(15):7200-11.
Leung YYee, Ryvkin P, Ungar LH, Gregory BD, San Wang L-.  2013.  CoRAL: predicting non-coding RNAs from small RNA-sequencing data.. Nucleic Acids Res. 41(14):e137.
Rasmussen SH, Jacobsen A, Krogh A.  2013.  cWords - systematic microRNA regulatory motif discovery from mRNA expression data.. Silence. 4(1):2.
Kutmon M, Kelder T, Mandaviya P, Evelo CTA, Coort SL.  2013.  CyTargetLinker: a cytoscape app to integrate regulatory interactions in network analysis.. PLoS One. 8(12):e82160.
Williamson V, Kim A, Xie B, G McMichael O, Gao Y, Vladimirov V.  2013.  Detecting miRNAs in deep-sequencing data: a software performance comparison and evaluation.. Brief Bioinform. 14(1):36-45.
Paraskevopoulou MD, Georgakilas G, Kostoulas N, Reczko M, Maragkakis M, Dalamagas TM, Hatzigeorgiou AG.  2013.  DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs.. Nucleic Acids Res. 41(Database issue):D239-45.
Paraskevopoulou MD, Georgakilas G, Kostoulas N, Vlachos IS, Vergoulis T, Reczko M, Filippidis C, Dalamagas T, Hatzigeorgiou AG.  2013.  DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows.. Nucleic Acids Res. 41(Web Server issue):W169-73.
Yang J-H, Qu L-H.  2013.  Discovery of microRNA regulatory networks by integrating multidimensional high-throughput data.. Adv Exp Med Biol. 774:251-66.
Zhang XDouglas, Zhang Z.  2013.  displayHTS: a R package for displaying data and results from high-throughput screening experiments.. Bioinformatics. 29(6):794-6.
Zhong L, Wang JTL, Wen D, Aris V, Soteropoulos P, Shapiro BA.  2013.  Effective classification of microRNA precursors using feature mining and AdaBoost algorithms.. OMICS. 17(9):486-93.
Garg A, Mohanram K, Di Cara A, Degueurce G, Ibberson M, Dorier J, Xenarios I.  2013.  Efficient computation of minimal perturbation sets in gene regulatory networks.. Front Physiol. 4:361.
Chang T-H, Huang H-Y, Hsu JBo-Kai, Weng S-L, Horng J-T, Da Huang H-.  2013.  An enhanced computational platform for investigating the roles of regulatory RNA and for identifying functional RNA motifs.. BMC Bioinformatics. 14 Suppl 2:S4.
Xu J, Wong C-W.  2013.  Enrichment analysis of miRNA targets.. Methods Mol Biol. 936:91-103.
Szcześniak MWojciech, Kabza M, Pokrzywa R, Gudyś A, Makałowska I.  2013.  ERISdb: a database of plant splice sites and splicing signals.. Plant Cell Physiol. 54(2):e10.
Robinson SW, Herzyk P, Dow JAT, Leader DP.  2013.  FlyAtlas: database of gene expression in the tissues of Drosophila melanogaster.. Nucleic Acids Res. 41(Database issue):D744-50.
Schmidt EE, Pelz O, Buhlmann S, Kerr G, Horn T, Boutros M.  2013.  GenomeRNAi: a database for cell-based and in vivo RNAi phenotypes, 2013 update.. Nucleic Acids Res. 41(Database issue):D1021-6.
Godnic I, Zorc M, Skok DJevsinek, Calin GAdrian, Horvat S, Dovc P, Kovac M, Kunej T.  2013.  Genome-wide and species-wide in silico screening for intragenic MicroRNAs in human, mouse and chicken.. PLoS One. 8(6):e65165.
D Skok J, Godnic I, Zorc M, Horvat S, Dovc P, Kovac M, Kunej T.  2013.  Genome-wide in silico screening for microRNA genetic variability in livestock species.. Anim Genet. 44(6):669-77.
Hauser F, Chen W, Deinlein U, Chang K, Ossowski S, Fitz J, Hannon GJ, Schroeder JI.  2013.  A genomic-scale artificial microRNA library as a tool to investigate the functionally redundant gene space in Arabidopsis.. Plant Cell. 25(8):2848-63.
Lertampaiporn S, Thammarongtham C, Nukoolkit C, Kaewkamnerdpong B, Ruengjitchatchawalya M.  2013.  Heterogeneous ensemble approach with discriminative features and modified-SMOTEbagging for pre-miRNA classification.. Nucleic Acids Res. 41(1):e21.
Brozzi A, Urbanelli L, Germain PLuc, Magini A, Emiliani C.  2013.  hLGDB: a database of human lysosomal genes and their regulation.. Database (Oxford). 2013:bat024.
Ahmadi H, Ahmadi A, Azimzadeh-Jamalkandi S, Shoorehdeli MAliyari, Salehzadeh-Yazdi A, Bidkhori G, Masoudi-Nejad A.  2013.  HomoTarget: a new algorithm for prediction of microRNA targets in Homo sapiens.. Genomics. 101(2):94-100.

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