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Found 1346 results
2014
Rukov JLewin, Wilentzik R, Jaffe I, Vinther J, Shomron N.  2014.  Pharmaco-miR: linking microRNAs and drug effects.. Brief Bioinform. 15(4):648-59.
Patra D, Fasold M, Langenberger D, Steger G, Grosse I, Stadler PF.  2014.  plantDARIO: web based quantitative and qualitative analysis of small RNA-seq data in plants.. Front Plant Sci. 5:708.
Bhattacharya A, Ziebarth JD, Cui Y.  2014.  PolymiRTS Database 3.0: linking polymorphisms in microRNAs and their target sites with human diseases and biological pathways.. Nucleic Acids Res. 42(Database issue):D86-91.
Wheeler HE, Aquino-Michaels K, Gamazon ER, Trubetskoy VV, M Dolan E, R Huang S, Cox NJ, Im HKyung.  2014.  Poly-omic prediction of complex traits: OmicKriging.. Genet Epidemiol. 38(5):402-15.
Li Y, Goldenberg A, Wong K-C, Zhang Z.  2014.  A probabilistic approach to explore human miRNA targetome by integrating miRNA-overexpression data and sequence information.. Bioinformatics. 30(5):621-8.
Mørk S, Pletscher-Frankild S, Caro APalleja, Gorodkin J, Jensen LJuhl.  2014.  Protein-driven inference of miRNA-disease associations.. Bioinformatics. 30(3):392-7.
Gupta Y, Witte M, Möller S, Ludwig RJ, Restle T, Zillikens D, Ibrahim SM.  2014.  ptRNApred: computational identification and classification of post-transcriptional RNA.. Nucleic Acids Res. 42(22):e167.
Politano G, Benso A, Savino A, Di Carlo S.  2014.  ReNE: a cytoscape plugin for regulatory network enhancement.. PLoS One. 9(12):e115585.
Guo L, Du Y, Chang S, Zhang K, Wang J.  2014.  rSNPBase: a database for curated regulatory SNPs.. Nucleic Acids Res. 42(Database issue):D1033-9.
Montes RAChávez, Rosas-Cárdenas Fde Fátima, De Paoli E, Accerbi M, Rymarquis LA, Mahalingam G, Marsch-Martínez N, Meyers BC, Green PJ, de Folter S.  2014.  Sample sequencing of vascular plants demonstrates widespread conservation and divergence of microRNAs.. Nat Commun. 5:3722.
Yagi M, Kosugi S, Hirakawa H, Ohmiya A, Tanase K, Harada T, Kishimoto K, Nakayama M, Ichimura K, Onozaki T et al..  2014.  Sequence analysis of the genome of carnation (Dianthus caryophyllus L.).. DNA Res. 21(3):231-41.
Yu J, Zhang Z, Wei J, Ling Y, Xu W, Su Z.  2014.  SFGD: a comprehensive platform for mining functional information from soybean transcriptome data and its use in identifying acyl-lipid metabolism pathways.. BMC Genomics. 15:271.
van de Wiel MA, Neerincx M, Buffart TE, Sie D, Verheul HMW.  2014.  ShrinkBayes: a versatile R-package for analysis of count-based sequencing data in complex study designs.. BMC Bioinformatics. 15:116.
Joshi T, Fitzpatrick MR, Chen S, Liu Y, Zhang H, Endacott RZ, Gaudiello EC, Stacey G, Nguyen HT, Xu D.  2014.  Soybean knowledge base (SoyKB): a web resource for integration of soybean translational genomics and molecular breeding.. Nucleic Acids Res. 42(Database issue):D1245-52.
Xu Y, Guo M, Liu X, Wang C, Liu Y.  2014.  SoyFN: a knowledge database of soybean functional networks.. Database (Oxford). 2014:bau019.
Kakrana A, Hammond R, Patel P, Nakano M, Meyers BC.  2014.  sPARTA: a parallelized pipeline for integrated analysis of plant miRNA and cleaved mRNA data sets, including new miRNA target-identification software.. Nucleic Acids Res. 42(18):e139.
Li J-H, Liu S, Zhou H, Qu L-H, Yang J-H.  2014.  starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data.. Nucleic Acids Res. 42(Database issue):D92-7.
Rennie W, Liu C, C Carmack S, Wolenc A, Kanoria S, Lu J, Long D, Ding Y.  2014.  STarMir: a web server for prediction of microRNA binding sites.. Nucleic Acids Res. 42(Web Server issue):W114-8.
Poos K, Smida J, Nathrath M, Maugg D, Baumhoer D, Neumann A, Korsching E.  2014.  Structuring osteosarcoma knowledge: an osteosarcoma-gene association database based on literature mining and manual annotation.. Database (Oxford). 2014
Aguirre-Gamboa R, Trevino V.  2014.  SurvMicro: assessment of miRNA-based prognostic signatures for cancer clinical outcomes by multivariate survival analysis.. Bioinformatics. 30(11):1630-2.
Yao Y, Ma L, Jia Q, Deng W, Liu Z, Zhang Y, Ren J, Xue Y, Jia H, Yang Q.  2014.  Systematic characterization of small RNAome during zebrafish early developmental stages.. BMC Genomics. 15:117.
Liu Z-P, Wu H, Zhu J, Miao H.  2014.  Systematic identification of transcriptional and post-transcriptional regulations in human respiratory epithelial cells during influenza A virus infection.. BMC Bioinformatics. 15:336.
Moreira FCordeiro, Dustan B, Hamoy IG, Ribeiro-Dos-Santos AM, Santos ARibeiro Do.  2014.  TargetCompare: A web interface to compare simultaneous miRNAs targets.. Bioinformation. 10(9):602-5.
Kery MBeth, Feldman M, Livny J, Tjaden B.  2014.  TargetRNA2: identifying targets of small regulatory RNAs in bacteria.. Nucleic Acids Res. 42(Web Server issue):W124-9.
Zhang C, Li G, Zhu S, Zhang S, Fang J.  2014.  tasiRNAdb: a database of ta-siRNA regulatory pathways.. Bioinformatics. 30(7):1045-6.

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