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Found 1346 results
2013
Madhavan S, Gauba R, Song L, Bhuvaneshwar K, Gusev Y, Byers S, Juhl H, Weiner L.  2013.  Platform for Personalized Oncology: Integrative analyses reveal novel molecular signatures associated with colorectal cancer relapse.. AMIA Jt Summits Transl Sci Proc. 2013:118.
Sun X, Dong B, Yin L, Zhang R, Du W, Liu D, Shi N, Li A, Liang Y, Mao L.  2013.  PMTED: a plant microRNA target expression database.. BMC Bioinformatics. 14:174.
Kurubanjerdjit N, Huang C-H, Lee Y-L, Tsai JJP, Ng K-L.  2013.  Prediction of microRNA-regulated protein interaction pathways in Arabidopsis using machine learning algorithms.. Comput Biol Med. 43(11):1645-52.
Xuan P, Han K, Guo M, Guo Y, Li J, Ding J, Liu Y, Dai Q, Li J, Teng Z et al..  2013.  Prediction of microRNAs associated with human diseases based on weighted k most similar neighbors.. PLoS One. 8(8):e70204.
Marsico A, Huska MR, Lasserre J, Hu H, Vucicevic D, Musahl A, Orom U, Vingron M.  2013.  PROmiRNA: a new miRNA promoter recognition method uncovers the complex regulation of intronic miRNAs.. Genome Biol. 14(8):R84.
Qin J, Li MJun, Wang P, Wong NSum, Wong MP, Xia Z, Tsao GSW, Zhang MQ, Wang J.  2013.  ProteoMirExpress: inferring microRNA and protein-centered regulatory networks from high-throughput proteomic and mRNA expression data.. Mol Cell Proteomics. 12(11):3379-87.
Chan W-L, Yang W-K, Da Huang H-, Chang J-G.  2013.  pseudoMap: an innovative and comprehensive resource for identification of siRNA-mediated mechanisms in human transcribed pseudogenes.. Database (Oxford). 2013:bat001.
Sengupta D, Pyne A, Maulik U, Bandyopadhyay S.  2013.  Reformulated Kemeny optimal aggregation with application in consensus ranking of microRNA targets.. IEEE/ACM Trans Comput Biol Bioinform. 10(3):742-51.
Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A et al..  2013.  RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more.. Nucleic Acids Res. 41(Database issue):D203-13.
Gomes CPC, Cho J-H, Hood L, Franco OL, Pereira RW, Wang K.  2013.  A Review of Computational Tools in microRNA Discovery.. Front Genet. 4:81.
Burge SW, Daub J, Eberhardt R, Tate J, Barquist L, Nawrocki EP, Eddy SR, Gardner PP, Bateman A.  2013.  Rfam 11.0: 10 years of RNA families.. Nucleic Acids Res. 41(Database issue):D226-32.
Mendoza MR, da Fonseca GC, Loss-Morais G, Alves R, Margis R, Bazzan ALC.  2013.  RFMirTarget: predicting human microRNA target genes with a random forest classifier.. PLoS One. 8(7):e70153.
Erhard F, Dölken L, Zimmer R.  2013.  RIP-chip enrichment analysis.. Bioinformatics. 29(1):77-83.
Yuan C, Sun Y.  2013.  RNA-CODE: a noncoding RNA classification tool for short reads in NGS data lacking reference genomes.. PLoS One. 8(10):e77596.
Bellaousov S, Reuter JS, Seetin MG, Mathews DH.  2013.  RNAstructure: Web servers for RNA secondary structure prediction and analysis.. Nucleic Acids Res. 41(Web Server issue):W471-4.
Zhong R, Kim MSoo, White MA, Xie Y, Xiao G.  2013.  SbacHTS: spatial background noise correction for high-throughput RNAi screening.. Bioinformatics. 29(17):2218-20.
Das S, Ghosal S, Chakrabarti J, Kozak K.  2013.  SeedSeq: off-target transcriptome database.. Biomed Res Int. 2013:905429.
Wu J-S, Zhou Z-H.  2013.  Sequence-based prediction of microRNA-binding residues in proteins using cost-sensitive Laplacian support vector machines.. IEEE/ACM Trans Comput Biol Bioinform. 10(3):752-9.
Axtell MJ.  2013.  ShortStack: comprehensive annotation and quantification of small RNA genes.. RNA. 19(6):740-51.
Fazekas D, Koltai M, Türei D, Módos D, Pálfy M, Dúl Z, Zsákai L, Szalay-Bekő M, Lenti K, Farkas IJ et al..  2013.  SignaLink 2 - a signaling pathway resource with multi-layered regulatory networks.. BMC Syst Biol. 7:7.
Boudreau RL, Spengler RM, Hylock RH, Kusenda BJ, Davis HA, Eichmann DA, Davidson BL.  2013.  siSPOTR: a tool for designing highly specific and potent siRNAs for human and mouse.. Nucleic Acids Res. 41(1):e9.
Liu X, Wang S, Meng F, Wang J, Zhang Y, Dai E, Yu X, Li X, Jiang W.  2013.  SM2miR: a database of the experimentally validated small molecules' effects on microRNA expression.. Bioinformatics. 29(3):409-11.
Bhattacharya A, Ziebarth JD, Cui Y.  2013.  SomamiR: a database for somatic mutations impacting microRNA function in cancer.. Nucleic Acids Res. 41(Database issue):D977-82.
Manyam G, Ivan C, Calin GA, Coombes KR.  2013.  targetHub: a programmable interface for miRNA-gene interactions.. Bioinformatics. 29(20):2657-8.
Sengupta D, Bandyopadhyay S.  2013.  Topological patterns in microRNA-gene regulatory network: studies in colorectal and breast cancer.. Mol Biosyst. 9(6):1360-71.

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