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Found 1346 results
2013
Zhao M, Sun J, Zhao Z.  2013.  TSGene: a web resource for tumor suppressor genes.. Nucleic Acids Res. 41(Database issue):D970-6.
Dong L, Luo M, Wang F, Zhang J, Li T, Yu J.  2013.  TUMIR: an experimentally supported database of microRNA deregulation in various cancers.. J Clin Bioinforma. 3(1):7.
Hu Y, Roesel C, Flockhart I, Perkins L, Perrimon N, Mohr SE.  2013.  UP-TORR: online tool for accurate and Up-to-Date annotation of RNAi Reagents.. Genetics. 195(1):37-45.
Jayaswal V, Schramm S-J, Mann GJ, Wilkins MR, Yang YHwa.  2013.  VAN: an R package for identifying biologically perturbed networks via differential variability analysis.. BMC Res Notes. 6:430.
Schmitz U, Wolkenhauer O.  2013.  Web resources for microRNA research.. Adv Exp Med Biol. 774:225-50.
Kleftogiannis D, Korfiati A, Theofilatos K, Likothanassis S, Tsakalidis A, Mavroudi S.  2013.  Where we stand, where we are moving: Surveying computational techniques for identifying miRNA genes and uncovering their regulatory role.. J Biomed Inform. 46(3):563-73.
Cheng W-C, Chung I-F, Huang T-S, Chang S-T, Sun H-J, Tsai C-F, Liang, ii M-L, Wong T-T, Wang H-W.  2013.  YM500: a small RNA sequencing (smRNA-seq) database for microRNA research.. Nucleic Acids Res. 41(Database issue):D285-94.
2012
Marín RM, Voellmy F, von Erlach T, Vaníček J.  2012.  Analysis of the accessibility of CLIP bound sites reveals that nucleation of the miRNA:mRNA pairing occurs preferentially at the 3'-end of the seed match.. RNA. 18(10):1760-70.
Yang X, Li L.  2012.  Analyzing the microRNA Transcriptome in Plants Using Deep Sequencing Data.. Biology (Basel). 1(2):297-310.
Lai L, Liberzon A, Hennessey J, Jiang G, Qi J, Mesirov JP, Ge SX.  2012.  AraPath: a knowledgebase for pathway analysis in Arabidopsis.. Bioinformatics. 28(17):2291-2.
Wan L, Ding J, Jin T, Guan J, Zhou S.  2012.  Automatically clustering large-scale miRNA sequences: methods and experiments.. BMC Genomics. 13 Suppl 8:S15.
Librado P, Vieira FG, Rozas J.  2012.  BadiRate: estimating family turnover rates by likelihood-based methods.. Bioinformatics. 28(2):279-81.
Yue D, Guo M, Chen Y, Huang Y.  2012.  A Bayesian decision fusion approach for microRNA target prediction.. BMC Genomics. 13 Suppl 8:S13.
Hu LL, Huang Y, Wang QC, Zou Q, Jiang Y.  2012.  Benchmark comparison of ab initio microRNA identification methods and software.. Genet Mol Res. 11(4):4525-38.
Tilton SC, Tal TL, Scroggins SM, Franzosa JA, Peterson ES, Tanguay RL, Waters KM.  2012.  Bioinformatics Resource Manager v2.3: an integrated software environment for systems biology with microRNA and cross-species analysis tools.. BMC Bioinformatics. 13:311.
Lee H, Yang Y, Chae H, Nam S, Choi D, Tangchaisin P, Herath C, Marru S, Nephew KP, Kim S.  2012.  BioVLAB-MMIA: a cloud environment for microRNA and mRNA integrated analysis (MMIA) on Amazon EC2.. IEEE Trans Nanobioscience. 11(3):266-72.
Zorc M, Skok DJevsinek, Godnic I, Calin GAdrian, Horvat S, Jiang Z, Dovc P, Kunej T.  2012.  Catalog of microRNA seed polymorphisms in vertebrates.. PLoS One. 7(1):e30737.
Bleda M, Tárraga J, De Maria A, Salavert F, Garcia-Alonso L, Celma M, Martin A, Dopazo J, Medina I.  2012.  CellBase, a comprehensive collection of RESTful web services for retrieving relevant biological information from heterogeneous sources.. Nucleic Acids Res. 40(Web Server issue):W609-14.
Reinhold WC, Sunshine M, Liu H, Varma S, Kohn KW, Morris J, Doroshow J, Pommier Y.  2012.  CellMiner: a web-based suite of genomic and pharmacologic tools to explore transcript and drug patterns in the NCI-60 cell line set.. Cancer Res. 72(14):3499-511.
Gu Z, Liu J, Cao K, Zhang J, Wang J.  2012.  Centrality-based pathway enrichment: a systematic approach for finding significant pathways dominated by key genes.. BMC Syst Biol. 6:56.
Numnark S, Mhuantong W, Ingsriswang S, Wichadakul D.  2012.  C-mii: a tool for plant miRNA and target identification.. BMC Genomics. 13 Suppl 7:S16.
Sarver AL, Subramanian S.  2012.  Competing endogenous RNA database.. Bioinformation. 8(15):731-3.
Washietl S, Will S, Hendrix DA, Goff LA, Rinn JL, Berger B, Kellis M.  2012.  Computational analysis of noncoding RNAs.. Wiley Interdiscip Rev RNA. 3(6):759-78.
Allmer J, Yousef M.  2012.  Computational methods for ab initio detection of microRNAs.. Front Genet. 3:209.
Wichadakul D, Mhuantong W, Jongkaewwattana A, Ingsriswang S.  2012.  A computational tool for the design of live attenuated virus vaccine based on microRNA-mediated gene silencing.. BMC Genomics. 13 Suppl 7:S15.

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