You are here

Home

Biblio

Found 1346 results
2011
Mitra R, Bandyopadhyay S.  2011.  MultiMiTar: a novel multi objective optimization based miRNA-target prediction method.. PLoS One. 6(9):e24583.
Corrada D, Viti F, Merelli I, Battaglia C, Milanesi L.  2011.  myMIR: a genome-wide microRNA targets identification and annotation tool.. Brief Bioinform. 12(6):588-600.
Mysara M, Garibaldi JM, Elhefnawi M.  2011.  MysiRNA-designer: a workflow for efficient siRNA design.. PLoS One. 6(10):e25642.
Shirdel EA, Xie W, Mak TW, Jurisica I.  2011.  NAViGaTing the micronome--using multiple microRNA prediction databases to identify signalling pathway-associated microRNAs.. PLoS One. 6(2):e17429.
Yu D, Danku J, Baxter I, Kim S, Vatamaniuk OK, Salt DE, Vitek O.  2011.  Noise reduction in genome-wide perturbation screens using linear mixed-effect models.. Bioinformatics. 27(16):2173-80.
Pantano L, Estivill X, Martí E.  2011.  A non-biased framework for the annotation and classification of the non-miRNA small RNA transcriptome.. Bioinformatics. 27(22):3202-3.
Wang B, Wang X-F, Xi Y.  2011.  Normalizing bead-based microRNA expression data: a measurement error model-based approach.. Bioinformatics. 27(11):1506-12.
Zhang S, Li Q, Liu J, Zhou XJasmine.  2011.  A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory modules.. Bioinformatics. 27(13):i401-9.
Meinel T, Schweiger MR, Ludewig AH, Chenna R, Krobitsch S, Herwig R.  2011.  Ortho2ExpressMatrix--a web server that interprets cross-species gene expression data by gene family information.. BMC Genomics. 12:483.
Cutts RJ, Gadaleta E, Hahn SA, Crnogorac-Jurcevic T, Lemoine NR, Chelala C.  2011.  The Pancreatic Expression database: 2011 update.. Nucleic Acids Res. 39(Database issue):D1023-8.
Corcoran DL, Georgiev S, Mukherjee N, Gottwein E, Skalsky RL, Keene JD, Ohler U.  2011.  PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data.. Genome Biol. 12(8):R79.
Sengupta D, Bandyopadhyay S.  2011.  Participation of microRNAs in human interactome: extraction of microRNA-microRNA regulations.. Mol Biosyst. 7(6):1966-73.
Seemann SE, Richter AS, Gesell T, Backofen R, Gorodkin J.  2011.  PETcofold: predicting conserved interactions and structures of two multiple alignments of RNA sequences.. Bioinformatics. 27(2):211-9.
Seemann SE, Menzel P, Backofen R, Gorodkin J.  2011.  The PETfold and PETcofold web servers for intra- and intermolecular structures of multiple RNA sequences.. Nucleic Acids Res. 39(Web Server issue):W107-11.
Xuan P, Guo M, Liu X, Huang Y, Li W, Huang Y.  2011.  PlantMiRNAPred: efficient classification of real and pseudo plant pre-miRNAs.. Bioinformatics. 27(10):1368-76.
Meng Y, Gou L, Chen D, Mao C, Jin Y, Wu P, Chen M.  2011.  PmiRKB: a plant microRNA knowledge base.. Nucleic Acids Res. 39(Database issue):D181-7.
Witkos TM, Koscianska E, Krzyzosiak WJ.  2011.  Practical Aspects of microRNA Target Prediction.. Curr Mol Med. 11(2):93-109.
Heikkinen L, Kolehmainen M, Wong G.  2011.  Prediction of microRNA targets in Caenorhabditis elegans using a self-organizing map.. Bioinformatics. 27(9):1247-54.
Zhang Y, Yang Y, Zhang H, Jiang X, Xu B, Xue Y, Cao Y, Zhai Q, Zhai Y, Xu M et al..  2011.  Prediction of novel pre-microRNAs with high accuracy through boosting and SVM.. Bioinformatics. 27(10):1436-7.
López-Romero P.  2011.  Pre-processing and differential expression analysis of Agilent microRNA arrays using the AgiMicroRna Bioconductor library.. BMC Genomics. 12:64.
Li X, Wang Q, Zheng Y, Lv S, Ning S, Sun J, Huang T, Zheng Q, Ren H, Xu J et al..  2011.  Prioritizing human cancer microRNAs based on genes' functional consistency between microRNA and cancer.. Nucleic Acids Res. 39(22):e153.
Dai X, Zhao PXuechun.  2011.  psRNATarget: a plant small RNA target analysis server.. Nucleic Acids Res. 39(Web Server issue):W155-9.
Gama-Castro S, Salgado H, Peralta-Gil M, Santos-Zavaleta A, Muñiz-Rascado L, Solano-Lira H, Jiménez-Jacinto V, Weiss V, García-Sotelo JS, López-Fuentes A et al..  2011.  RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units).. Nucleic Acids Res. 39(Database issue):D98-105.
Elefant N, Berger A, Shein H, Hofree M, Margalit H, Altuvia Y.  2011.  RepTar: a database of predicted cellular targets of host and viral miRNAs.. Nucleic Acids Res. 39(Database issue):D188-94.
Gardner PP, Daub J, Tate J, Moore BL, Osuch IH, Griffiths-Jones S, Finn RD, Nawrocki EP, Kolbe DL, Eddy SR et al..  2011.  Rfam: Wikipedia, clans and the "decimal" release.. Nucleic Acids Res. 39(Database issue):D141-5.

Pages