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Found 1346 results
2012
Reyes D, Cepeda V, González R, Vidal R.  2012.  Ssa miRNAs DB: Online repository of in silico predicted miRNAs in Salmo salar.. Bioinformation. 8(6):284-6.
Yu J, Xing X, Zeng L, Sun J, Li W, Sun H, He Y, Li J, Zhang G, Wang C et al..  2012.  SyStemCell: a database populated with multiple levels of experimental data from stem cell differentiation research.. PLoS One. 7(7):e35230.
Vergoulis T, Vlachos IS, Alexiou P, Georgakilas G, Maragkakis M, Reczko M, Gerangelos S, Koziris N, Dalamagas T, Hatzigeorgiou AG.  2012.  TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support.. Nucleic Acids Res. 40(Database issue):D222-9.
Balaga O, Friedman Y, Linial M.  2012.  Toward a combinatorial nature of microRNA regulation in human cells.. Nucleic Acids Res. 40(19):9404-16.
Qiu C, Chen G, Cui Q.  2012.  Towards the understanding of microRNA and environmental factor interactions and their relationships to human diseases.. Sci Rep. 2:318.
Dassi E, Quattrone A.  2012.  Tuning the engine: an introduction to resources on post-transcriptional regulation of gene expression.. RNA Biol. 9(10):1224-32.
Dragiev P, Nadon R, Makarenkov V.  2012.  Two effective methods for correcting experimental high-throughput screening data.. Bioinformatics. 28(13):1775-82.
Stocks MB, Moxon S, Mapleson D, Woolfenden HC, Mohorianu I, Folkes L, Schwach F, Dalmay T, Moulton V.  2012.  The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets.. Bioinformatics. 28(15):2059-61.
Qiu C, Wang D, Wang E, Cui Q.  2012.  An upstream interacting context based framework for the computational inference of microRNA functions.. Mol Biosyst. 8(5):1492-8.
Medina I, De Maria A, Bleda M, Salavert F, Alonso R, Gonzalez CY, Dopazo J.  2012.  VARIANT: Command Line, Web service and Web interface for fast and accurate functional characterization of variants found by Next-Generation Sequencing.. Nucleic Acids Res. 40(Web Server issue):W54-8.
Kalra H, Simpson RJ, Ji H, Aikawa E, Altevogt P, Askenase P, Bond VC, Borràs FE, Breakefield X, Budnik V et al..  2012.  Vesiclepedia: a compendium for extracellular vesicles with continuous community annotation.. PLoS Biol. 10(12):e1001450.
Kim H, Park S, Min H, Yoon S.  2012.  vHoT: a database for predicting interspecies interactions between viral microRNA and host genomes.. Arch Virol. 157(3):497-501.
Nascimento LCosta do, Costa GGilson Lac, Binneck E, Pereira GAmarante G, Carazzolle MFalsarella.  2012.  A web-based bioinformatics interface applied to the GENOSOJA Project: Databases and pipelines.. Genet Mol Biol. 35(1 (suppl)):203-11.
2011
Brazas MD, Yim DS, Yamada JT, Ouellette BFFrancis.  2011.  The 2011 Bioinformatics Links Directory update: more resources, tools and databases and features to empower the bioinformatics community.. Nucleic Acids Res. 39(Web Server issue):W3-7.
Reczko M, Maragkakis M, Alexiou P, Papadopoulos GL, Hatzigeorgiou AG.  2011.  Accurate microRNA Target Prediction Using Detailed Binding Site Accessibility and Machine Learning on Proteomics Data.. Front Genet. 2:103.
Chi S-M, Kim J, Kim S-Y, Nam D.  2011.  ADGO 2.0: interpreting microarray data and list of genes using composite annotations.. Nucleic Acids Res. 39(Web Server issue):W302-6.
Jiang Z, Liu X, Peng Z, Wan Y, Ji Y, He W, Wan W, Luo J, Guo H.  2011.  AHD2.0: an update version of Arabidopsis Hormone Database for plant systematic studies.. Nucleic Acids Res. 39(Database issue):D1123-9.
Ganguli S, Mitra S, Datta A.  2011.  Antagomirbase- a putative antagomir database.. Bioinformation. 7(1):41-3.
Antonov AV.  2011.  BioProfiling.de: analytical web portal for high-throughput cell biology.. Nucleic Acids Res. 39(Web Server issue):W323-7.
Agarwal SM, Raghav D, Singh H, Raghava GPS.  2011.  CCDB: a curated database of genes involved in cervix cancer.. Nucleic Acids Res. 39(Database issue):D975-9.
M Kallio A, Tuimala JT, Hupponen T, Klemelä P, Gentile M, Scheinin I, Koski M, Käki J, Korpelainen EI.  2011.  Chipster: user-friendly analysis software for microarray and other high-throughput data.. BMC Genomics. 12:507.
Wan P, Wu J, Zhou Y, Xiao J, Feng J, Zhao W, Xiang S, Jiang G, Chen JY.  2011.  Computational analysis of drought stress-associated miRNAs and miRNA co-regulation network in Physcomitrella patens.. Genomics Proteomics Bioinformatics. 9(1-2):37-44.
Dai X, Zhuang Z, Zhao PXuechun.  2011.  Computational analysis of miRNA targets in plants: current status and challenges.. Brief Bioinform. 12(2):115-21.
Baroudi MEl, Corá D, Bosia C, Osella M, Caselle M.  2011.  A curated database of miRNA mediated feed-forward loops involving MYC as master regulator.. PLoS One. 6(3):e14742.
Fasold M, Langenberger D, Binder H, Stadler PF, Hoffmann S.  2011.  DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments.. Nucleic Acids Res. 39(Web Server issue):W112-7.

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