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Found 1346 results
2011
Agirre E, Eyras E.  2011.  Databases and resources for human small non-coding RNAs.. Hum Genomics. 5(3):192-9.
Amin SB, Shah PK, Yan A, Adamia S, Minvielle S, Avet-Loiseau H, Munshi NC, Li C.  2011.  The dChip survival analysis module for microarray data.. BMC Bioinformatics. 12:72.
Kiryu H, Terai G, Imamura O, Yoneyama H, Suzuki K, Asai K.  2011.  A detailed investigation of accessibilities around target sites of siRNAs and miRNAs.. Bioinformatics. 27(13):1788-97.
Maragkakis M, Vergoulis T, Alexiou P, Reczko M, Plomaritou K, Gousis M, Kourtis K, Koziris N, Dalamagas T, Hatzigeorgiou AG.  2011.  DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association.. Nucleic Acids Res. 39(Web Server issue):W145-8.
Schmeier S, Schaefer U, MacPherson CR, Bajic VB.  2011.  dPORE-miRNA: polymorphic regulation of microRNA genes.. PLoS One. 6(2):e16657.
Murali T, Pacifico S, Yu J, Guest S, Roberts GG, Finley RL.  2011.  DroID 2011: a comprehensive, integrated resource for protein, transcription factor, RNA and gene interactions for Drosophila.. Nucleic Acids Res. 39(Database issue):D736-43.
Jha A, Shankar R.  2011.  Employing machine learning for reliable miRNA target identification in plants.. BMC Genomics. 12:636.
Oulas A, Karathanasis N, Louloupi A, Poirazi P.  2011.  Finding cancer-associated miRNAs: methods and tools.. Mol Biotechnol. 49(1):97-107.
Dannenfelser R, Lachmann A, Szenk M, Ma'ayan A.  2011.  FNV: light-weight flash-based network and pathway viewer.. Bioinformatics. 27(8):1181-2.
Rho K, Kim B, Jang Y, Lee S, Bae T, Seo J, Seo C, Lee J, Kang H, Yu U et al..  2011.  GARNET--gene set analysis with exploration of annotation relations.. BMC Bioinformatics. 12 Suppl 1:S25.
Hofer E, Laschober GT, Hackl M, Thallinger GG, Lepperdinger G, Grillari J, Jansen-Dürr P, Trajanoski Z.  2011.  GiSAO.db: a database for ageing research.. BMC Genomics. 12:262.
Reimand J, Arak T, Vilo J.  2011.  g:Profiler--a web server for functional interpretation of gene lists (2011 update).. Nucleic Acids Res. 39(Web Server issue):W307-15.
Gade S, Porzelius C, Fälth M, Brase JC, Wuttig D, Kuner R, Binder H, Sültmann H, Beissbarth T.  2011.  Graph based fusion of miRNA and mRNA expression data improves clinical outcome prediction in prostate cancer.. BMC Bioinformatics. 12:488.
Caldas J, Kaski S.  2011.  Hierarchical generative biclustering for microRNA expression analysis.. J Comput Biol. 18(3):251-61.
Gennarino VAlessandro, Sardiello M, Mutarelli M, Dharmalingam G, Maselli V, Lago G, Banfi S.  2011.  HOCTAR database: a unique resource for microRNA target prediction.. Gene. 480(1-2):51-8.
Wang X, Terfve C, Rose JC, Markowetz F.  2011.  HTSanalyzeR: an R/Bioconductor package for integrated network analysis of high-throughput screens.. Bioinformatics. 27(6):879-80.
Kim H-J, Baek K-H, Lee B-W, Choi D, Hur C-G.  2011.  In silico identification and characterization of microRNAs and their putative target genes in Solanaceae plants.. Genome. 54(2):91-8.
Thomas LF, Saito T, Sætrom P.  2011.  Inferring causative variants in microRNA target sites.. Nucleic Acids Res. 39(16):e109.
Girijadevi R, Sreedevi VChandra Su, Sreedharan JVeluthai, Pillai MRadhakrish.  2011.  IntmiR: a complete catalogue of intronic miRNAs of human and mouse.. Bioinformation. 5(10):458-9.
Golbert DCF, Linhares-Lacerda L, Almeida LG, Correa-de-Santana E, de Oliveira AR, Mundstein AS, Savino W, de Vasconcelos ATR.  2011.  Laminin database: a tool to retrieve high-throughput and curated data for studies on laminins.. Nucleic Acids Res. 39(Database issue):D320-3.
Lu Y, Zhou Y, Qu W, Deng M, Zhang C.  2011.  A Lasso regression model for the construction of microRNA-target regulatory networks.. Bioinformatics. 27(17):2406-13.
Liu X, Li Z, Jiang Z, Zhao Y, Peng J, Jin J, Guo H, Luo J.  2011.  LSD: a leaf senescence database.. Nucleic Acids Res. 39(Database issue):D1103-7.
Xuan P, Guo M, Huang Y, Li W, Huang Y.  2011.  MaturePred: efficient identification of microRNAs within novel plant pre-miRNAs.. PLoS One. 6(11):e27422.
Kaya KD, Karakülah G, Yakicier CM, Acar AC, Konu O.  2011.  mESAdb: microRNA expression and sequence analysis database.. Nucleic Acids Res. 39(Database issue):D170-80.
Mestdagh P, Lefever S, Pattyn F, Ridzon D, Fredlund E, Fieuw A, Ongenaert M, Vermeulen J, De Paepe A, Wong L et al..  2011.  The microRNA body map: dissecting microRNA function through integrative genomics.. Nucleic Acids Res. 39(20):e136.

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