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Found 1346 results
2012
Coronnello C, Hartmaier R, Arora A, Huleihel L, Pandit KV, Bais AS, Butterworth M, Kaminski N, Stormo GD, Oesterreich S et al..  2012.  Novel modeling of combinatorial miRNA targeting identifies SNP with potential role in bone density.. PLoS Comput Biol. 8(12):e1002830.
Reyes-Herrera PH, Ficarra E.  2012.  One decade of development and evolution of microRNA target prediction algorithms.. Genomics Proteomics Bioinformatics. 10(5):254-63.
Huang H, Wu X, Sonachalam M, Mandape SN, Pandey R, MacDorman KF, Wan P, Chen JY.  2012.  PAGED: a pathway and gene-set enrichment database to enable molecular phenotype discoveries.. BMC Bioinformatics. 13 Suppl 15:S2.
Folkes L, Moxon S, Woolfenden HC, Stocks MB, Szittya G, Dalmay T, Moulton V.  2012.  PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing.. Nucleic Acids Res. 40(13):e103.
Wrzodek C, Eichner J, Zell A.  2012.  Pathway-based visualization of cross-platform microarray datasets.. Bioinformatics. 28(23):3021-6.
Ruepp A, Kowarsch A, Theis F.  2012.  PhenomiR: microRNAs in human diseases and biological processes.. Methods Mol Biol. 822:249-60.
Williams PH, Eyles R, Weiller G.  2012.  Plant MicroRNA Prediction by Supervised Machine Learning Using C5.0 Decision Trees.. J Nucleic Acids. 2012:652979.
Ziebarth JD, Bhattacharya A, Chen A, Cui Y.  2012.  PolymiRTS Database 2.0: linking polymorphisms in microRNA target sites with human diseases and complex traits.. Nucleic Acids Res. 40(Database issue):D216-21.
Song X, Cheng L, Zhou T, Guo X, Zhang X, Chen Y-PPhoebe, Han P, Sha J.  2012.  Predicting miRNA-mediated gene silencing mode based on miRNA-target duplex features.. Comput Biol Med. 42(1):1-7.
Cheng F, Liu C, Jiang J, Lu W, Li W, Liu G, Zhou W, Huang J, Tang Y.  2012.  Prediction of drug-target interactions and drug repositioning via network-based inference.. PLoS Comput Biol. 8(5):e1002503.
Goswami CPankaj, Nakshatri H.  2012.  PROGmiR: a tool for identifying prognostic miRNA biomarkers in multiple cancers using publicly available data.. J Clin Bioinforma. 2(1):23.
Wu H-J, Ma Y-K, Chen T, Wang M, Wang X-J.  2012.  PsRobot: a web-based plant small RNA meta-analysis toolbox.. Nucleic Acids Res. 40(Web Server issue):W22-8.
Muniategui A, Nogales-Cadenas R, Vazquez M, Aranguren XL, Agirre X, Luttun A, Prosper F, Pascual-Montano A, Rubio A.  2012.  Quantification of miRNA-mRNA interactions.. PLoS One. 7(2):e30766.
Tyagi V, Prasad CSiva.  2012.  RAmiRNA: Software suite for generation of SVMbased prediction models of mature miRNAs.. Bioinformation. 8(12):581-5.
Ramana J.  2012.  RCDB: Renal Cancer Gene Database.. BMC Res Notes. 5:246.
Wang PI, Hwang S, Kincaid RP, Sullivan CS, Lee I, Marcotte EM.  2012.  RIDDLE: reflective diffusion and local extension reveal functional associations for unannotated gene sets via proximity in a gene network.. Genome Biol. 13(12):R125.
Wenzel A, Akbasli E, Gorodkin J.  2012.  RIsearch: fast RNA-RNA interaction search using a simplified nearest-neighbor energy model.. Bioinformatics. 28(21):2738-46.
Olejniczak M, Galka-Marciniak P, Polak K, Fligier A, Krzyzosiak WJ.  2012.  RNAimmuno: a database of the nonspecific immunological effects of RNA interference and microRNA reagents.. RNA. 18(5):930-5.
Li F, Ryvkin P, Childress DM, Valladares O, Gregory BD, San Wang L-.  2012.  SAVoR: a server for sequencing annotation and visualization of RNA structures.. Nucleic Acids Res. 40(Web Server issue):W59-64.
Muñoz-Mérida A, Perkins JR, Viguera E, Thode G, Bejarano ER, Pérez-Pulido AJ.  2012.  Semirna: searching for plant miRNAs using target sequences.. OMICS. 16(4):168-77.
Li J-W, Schmieder R, R Ward M, Delenick J, Olivares EC, Mittelman D.  2012.  SEQanswers: an open access community for collaboratively decoding genomes.. Bioinformatics. 28(9):1272-3.
Li J-W, Robison K, Martin M, Sjödin A, Usadel B, Young M, Olivares EC, Bolser DM.  2012.  The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis.. Nucleic Acids Res. 40(Database issue):D1313-7.
Gupta V, Markmann K, Pedersen CNS, Stougaard J, Andersen SU.  2012.  shortran: a pipeline for small RNA-seq data analysis.. Bioinformatics. 28(20):2698-700.
Li F, Orban R, Baker B.  2012.  SoMART: a web server for plant miRNA, tasiRNA and target gene analysis.. Plant J. 70(5):891-901.
Joshi T, Patil K, Fitzpatrick MR, Franklin LD, Yao Q, Cook JR, Wang Z, Libault M, Brechenmacher L, Valliyodan B et al..  2012.  Soybean Knowledge Base (SoyKB): a web resource for soybean translational genomics.. BMC Genomics. 13 Suppl 1:S15.

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