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Found 1346 results
2010
Zhu E, Zhao F, Xu G, Hou H, Zhou L, Li X, Sun Z, Wu J.  2010.  mirTools: microRNA profiling and discovery based on high-throughput sequencing.. Nucleic Acids Res. 38(Web Server issue):W392-7.
Hendrix D, Levine M, Shi W.  2010.  miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data.. Genome Biol. 11(4):R39.
Bazzini AA, Asís R, González V, Bassi S, Conte M, Soria M, Fernie AR, Asurmendi S, Carrari F.  2010.  miSolRNA: A tomato micro RNA relational database.. BMC Plant Biol. 10:240.
Hach F, Hormozdiari F, Alkan C, Hormozdiari F, Birol I, Eichler EE, S Sahinalp C.  2010.  mrsFAST: a cache-oblivious algorithm for short-read mapping.. Nat Methods. 7(8):576-7.
Chandra V, Girijadevi R, Nair AS, Pillai SS, Pillai RM.  2010.  MTar: a computational microRNA target prediction architecture for human transcriptome.. BMC Bioinformatics. 11 Suppl 1:S2.
Zhang Y, Guan D-G, Yang J-H, Shao P, Zhou H, Qu L-H.  2010.  ncRNAimprint: a comprehensive database of mammalian imprinted noncoding RNAs.. RNA. 16(10):1889-901.
Tacutu R, Budovsky A, Fraifeld VE.  2010.  The NetAge database: a compendium of networks for longevity, age-related diseases and associated processes.. Biogerontology. 11(4):513-22.
Buermans HPJ, Ariyurek Y, van Ommen G, Dunnen JT den, Hoen PAC 't.  2010.  New methods for next generation sequencing based microRNA expression profiling.. BMC Genomics. 11:716.
Kwan P, Birmingham A.  2010.  NoiseMaker: simulated screens for statistical assessment.. Bioinformatics. 26(19):2484-5.
Teune J-H, Steger G.  2010.  NOVOMIR: De Novo Prediction of MicroRNA-Coding Regions in a Single Plant-Genome.. J Nucleic Acids. 2010
Matveeva OV, Kang Y, Spiridonov AN, Saetrom P, Nemtsov VA, Ogurtsov AY, Nechipurenko YD, Shabalina SA.  2010.  Optimization of duplex stability and terminal asymmetry for shRNA design.. PLoS One. 5(4):e10180.
Gamazon ER, Duan S, Zhang W, Huang RStephanie, Kistner EO, Dolan MEileen, Cox NJ.  2010.  PACdb: a database for cell-based pharmacogenomics.. Pharmacogenet Genomics. 20(4):269-73.
Hiard S, Charlier C, Coppieters W, Georges M, Baurain D.  2010.  Patrocles: a database of polymorphic miRNA-mediated gene regulation in vertebrates.. Nucleic Acids Res. 38(Database issue):D640-51.
Wang B, Wang X-F, Howell P, Qian X, Huang K, Riker AI, Ju J, Xi Y.  2010.  A personalized microRNA microarray normalization method using a logistic regression model.. Bioinformatics. 26(2):228-34.
Ruepp A, Kowarsch A, Schmidl D, Buggenthin F, Brauner B, Dunger I, Fobo G, Frishman G, Montrone C, Theis FJ.  2010.  PhenomiR: a knowledgebase for microRNA expression in diseases and biological processes.. Genome Biol. 11(1):R6.
Zhao D, Wang Y, Luo D, Shi X, Wang L, Xu D, Yu J, Liang Y.  2010.  PMirP: a pre-microRNA prediction method based on structure-sequence hybrid features.. Artif Intell Med. 49(2):127-32.
Zhang Z, Yu J, Li D, Zhang Z, Liu F, Zhou X, Wang T, Ling Y, Su Z.  2010.  PMRD: plant microRNA database.. Nucleic Acids Res. 38(Database issue):D806-13.
Lin K, Qian Z, Lu L, Lu L, Lai L, Gu J, Zeng Z, Li H, Cai Y.  2010.  Predicting miRNA's target from primary structure by the nearest neighbor algorithm.. Mol Divers. 14(4):719-29.
Bonnet E, Michoel T, Van de Peer Y.  2010.  Prediction of a gene regulatory network linked to prostate cancer from gene expression, microRNA and clinical data.. Bioinformatics. 26(18):i638-44.
Laganà A, Forte S, Russo F, Giugno R, Pulvirenti A, Ferro A.  2010.  Prediction of human targets for viral-encoded microRNAs by thermodynamics and empirical constraints.. J RNAi Gene Silencing. 6(1):379-85.
Joshi T, Yan Z, Libault M, Jeong D-H, Park S, Green PJ, D Sherrier J, Farmer A, May G, Meyers BC et al..  2010.  Prediction of novel miRNAs and associated target genes in Glycine max.. BMC Bioinformatics. 11 Suppl 1:S14.
Brazas MD, Yamada JT, Ouellette BFFrancis.  2010.  Providing web servers and training in Bioinformatics: 2010 update on the Bioinformatics Links Directory.. Nucleic Acids Res. 38(Web Server issue):W3-6.
Sridhar J, Sowmiya G, Sekar K, Rafi ZAhamed.  2010.  PsRNA: a computing engine for the comparative identification of putative small RNA locations within intergenic regions.. Genomics Proteomics Bioinformatics. 8(2):127-34.
Bandyopadhyay S, Bhattacharyya M.  2010.  PuTmiR: a database for extracting neighboring transcription factors of human microRNAs.. BMC Bioinformatics. 11:190.
Reuter JS, Mathews DH.  2010.  RNAstructure: software for RNA secondary structure prediction and analysis.. BMC Bioinformatics. 11:129.

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