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Found 1346 results
2011
Wen J, Parker BJ, Jacobsen A, Krogh A.  2011.  MicroRNA transfection and AGO-bound CLIP-seq data sets reveal distinct determinants of miRNA action.. RNA. 17(5):820-34.
Cai B, Yang X, Tuskan GA, Cheng Z-M.  2011.  MicroSyn: a user friendly tool for detection of microsynteny in a gene family.. BMC Bioinformatics. 12:79.
H Mewes W, Ruepp A, Theis F, Rattei T, Walter M, Frishman D, Suhre K, Spannagl M, Mayer KFX, Stümpflen V et al..  2011.  MIPS: curated databases and comprehensive secondary data resources in 2010.. Nucleic Acids Res. 39(Database issue):D220-4.
Qiu C, Wang J, Cui Q.  2011.  miR2Gene: pattern discovery of single gene, multiple genes, and pathways by enrichment analysis of their microRNA regulators.. BMC Syst Biol. 5 Suppl 2:S9.
Liang Z, Zhou H, He Z, Zheng H, Wu J.  2011.  mirAct: a web tool for evaluating microRNA activity based on gene expression data.. Nucleic Acids Res. 39(Web Server issue):W139-44.
Hackenberg M, Rodríguez-Ezpeleta N, Aransay AM.  2011.  miRanalyzer: an update on the detection and analysis of microRNAs in high-throughput sequencing experiments.. Nucleic Acids Res. 39(Web Server issue):W132-8.
Kozomara A, Griffiths-Jones S.  2011.  miRBase: integrating microRNA annotation and deep-sequencing data.. Nucleic Acids Res. 39(Database issue):D152-7.
Huang GT, Athanassiou C, Benos PV.  2011.  mirConnX: condition-specific mRNA-microRNA network integrator.. Nucleic Acids Res. 39(Web Server issue):W416-23.
Yang X, Li L.  2011.  miRDeep-P: a computational tool for analyzing the microRNA transcriptome in plants.. Bioinformatics. 27(18):2614-5.
Reyes-Herrera PH, Ficarra E, Acquaviva A, Macii E.  2011.  miREE: miRNA recognition elements ensemble.. BMC Bioinformatics. 12:454.
Yang Q, Qiu C, Yang J, Wu Q, Cui Q.  2011.  miREnvironment database: providing a bridge for microRNAs, environmental factors and phenotypes.. Bioinformatics. 27(23):3329-30.
Guan D-G, Liao J-Y, Qu Z-H, Zhang Y, Qu L-H.  2011.  mirExplorer: detecting microRNAs from genome and next generation sequencing data using the AdaBoost method with transition probability matrix and combined features.. RNA Biol. 8(5):922-34.
Ding J, Zhou S, Guan J.  2011.  miRFam: an effective automatic miRNA classification method based on n-grams and a multiclass SVM.. BMC Bioinformatics. 12:216.
Cho S, Jun Y, Lee S, Choi H-S, Jung S, Jang Y, Park C, Kim S, Lee S, Kim W.  2011.  miRGator v2.0: an integrated system for functional investigation of microRNAs.. Nucleic Acids Res. 39(Database issue):D158-62.
Rieger JK, Bodan DA, Zanger UM.  2011.  MIRNA-DISTILLER: A Stand-Alone Application to Compile microRNA Data from Databases.. Front Genet. 2:39.
Le Béchec A, Portales-Casamar E, Vetter G, Moes M, Zindy P-J, Saumet A, Arenillas D, Theillet C, Wasserman WW, Lecellier C-H et al..  2011.  MIR@NT@N: a framework integrating transcription factors, microRNAs and their targets to identify sub-network motifs in a meta-regulation network model.. BMC Bioinformatics. 12:67.
Wu Y, Wei B, Liu H, Li T, Rayner S.  2011.  MiRPara: a SVM-based software tool for prediction of most probable microRNA coding regions in genome scale sequences.. BMC Bioinformatics. 12:107.
Hsu JBo-Kai, Chiu C-M, Da Hsu S-, Huang W-Y, Chien C-H, Lee T-Y, Da Huang H-.  2011.  miRTar: an integrated system for identifying miRNA-target interactions in human.. BMC Bioinformatics. 12:300.
Da Hsu S-, Lin F-M, Wu W-Y, Liang C, Huang W-C, Chan W-L, Tsai W-T, Chen G-Z, Lee C-J, Chiu C-M et al..  2011.  miRTarBase: a database curates experimentally validated microRNA-target interactions.. Nucleic Acids Res. 39(Database issue):D163-9.
Milev I, Yahubyan G, Minkov I, Baev V.  2011.  miRTour: Plant miRNA and target prediction tool.. Bioinformation. 6(6):248-9.
Bhartiya D, Laddha SV, Mukhopadhyay A, Scaria V.  2011.  miRvar: A comprehensive database for genomic variations in microRNAs.. Hum Mutat. 32(6):E2226-45.
Plaisier CL, J Bare C, Baliga NS.  2011.  miRvestigator: web application to identify miRNAs responsible for co-regulated gene expression patterns discovered through transcriptome profiling.. Nucleic Acids Res. 39(Web Server issue):W125-31.
Dweep H, Sticht C, Pandey P, Gretz N.  2011.  miRWalk--database: prediction of possible miRNA binding sites by "walking" the genes of three genomes.. J Biomed Inform. 44(5):839-47.
Kowarsch A, Preusse M, Marr C, Theis FJ.  2011.  miTALOS: analyzing the tissue-specific regulation of signaling pathways by human and mouse microRNAs.. RNA. 17(5):809-19.
D'Antonio M, Ciccarelli FD.  2011.  Modification of gene duplicability during the evolution of protein interaction network.. PLoS Comput Biol. 7(4):e1002029.

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