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Found 1346 results
2012
Bruno AE, Li L, Kalabus JL, Pan Y, Yu A, Hu Z.  2012.  miRdSNP: a database of disease-associated SNPs and microRNA target sites on 3'UTRs of human genes.. BMC Genomics. 13:44.
Laganà A, Paone A, Veneziano D, Cascione L, Gasparini P, Carasi S, Russo F, Nigita G, Macca V, Giugno R et al..  2012.  miR-EdiTar: a database of predicted A-to-I edited miRNA target sites.. Bioinformatics. 28(23):3166-8.
Wen M, Shen Y, Shi S, Tang T.  2012.  miREvo: an integrative microRNA evolutionary analysis platform for next-generation sequencing experiments.. BMC Bioinformatics. 13:140.
Bielewicz D, Dolata J, Zielezinski A, Alaba S, Szarzynska B, Szczesniak MW, Jarmolowski A, Szweykowska-Kulinska Z, Karlowski WM.  2012.  mirEX: a platform for comparative exploration of plant pri-miRNA expression data.. Nucleic Acids Res. 40(Database issue):D191-7.
Liu H, Jin T, Liao R, Wan L, Xu B, Zhou S, Guan J.  2012.  miRFANs: an integrated database for Arabidopsis thaliana microRNA function annotations.. BMC Plant Biol. 12:68.
Vejnar CE, Zdobnov EM.  2012.  MiRmap: comprehensive prediction of microRNA target repression strength.. Nucleic Acids Res. 40(22):11673-83.
He C, Li Y-X, Zhang G, Gu Z, Yang R, Li J, Lu ZJohn, Zhou Z-H, Zhang C, Wang J.  2012.  MiRmat: mature microRNA sequence prediction.. PLoS One. 7(12):e51673.
Kumar A, Wong AK-L, Tizard ML, Moore RJ, Lefèvre C.  2012.  miRNA_Targets: a database for miRNA target predictions in coding and non-coding regions of mRNAs.. Genomics. 100(6):352-6.
Szcześniak MWojciech, Deorowicz S, Gapski J, Kaczyński Ł, Makalowska I.  2012.  miRNEST database: an integrative approach in microRNA search and annotation.. Nucleic Acids Res. 40(Database issue):D198-204.
Qian K, Auvinen E, Greco D, Auvinen P.  2012.  miRSeqNovel: an R based workflow for analyzing miRNA sequencing data.. Mol Cell Probes. 26(5):208-11.
Liu C, Zhang F, Li T, Lu M, Wang L, Yue W, Zhang D.  2012.  MirSNP, a database of polymorphisms altering miRNA target sites, identifies miRNA-related SNPs in GWAS SNPs and eQTLs.. BMC Genomics. 13:661.
Lu T-P, Lee C-Y, Tsai M-H, Chiu Y-C, Hsiao CKate, Lai L-C, Chuang EY.  2012.  miRSystem: an integrated system for characterizing enriched functions and pathways of microRNA targets.. PLoS One. 7(8):e42390.
Bhattacharyya M, Das M, Bandyopadhyay S.  2012.  miRT: a database of validated transcription start sites of human microRNAs.. Genomics Proteomics Bioinformatics. 10(5):310-6.
Laczny C, Leidinger P, Haas J, Ludwig N, Backes C, Gerasch A, Kaufmann M, Vogel B, Katus HA, Meder B et al..  2012.  miRTrail--a comprehensive webserver for analyzing gene and miRNA patterns to enhance the understanding of regulatory mechanisms in diseases.. BMC Bioinformatics. 13:36.
Kiezun A, Artzi S, Modai S, Volk N, Isakov O, Shomron N.  2012.  miRviewer: a multispecies microRNA homologous viewer.. BMC Res Notes. 5:92.
Stempor PA, Cauchi M, Wilson P.  2012.  MMpred: functional miRNA--mRNA interaction analyses by miRNA expression prediction.. BMC Genomics. 13:620.
Croft L, Szklarczyk D, Jensen LJuhl, Gorodkin J.  2012.  Multiple independent analyses reveal only transcription factors as an enriched functional class associated with microRNAs.. BMC Syst Biol. 6:90.
Waggott D, Chu K, Yin S, Wouters BG, Liu F-F, Boutros PC.  2012.  NanoStringNorm: an extensible R package for the pre-processing of NanoString mRNA and miRNA data.. Bioinformatics. 28(11):1546-8.
Mendes ND, Heyne S, Freitas AT, Sagot M-F, Backofen R.  2012.  Navigating the unexplored seascape of pre-miRNA candidates in single-genome approaches.. Bioinformatics. 28(23):3034-41.
Chen C-J, Servant N, Toedling J, Sarazin A, Marchais A, Duvernois-Berthet E, Cognat V, Colot V, Voinnet O, Heard E et al..  2012.  ncPRO-seq: a tool for annotation and profiling of ncRNAs in sRNA-seq data.. Bioinformatics. 28(23):3147-9.
Tempel S, Pollet N, Tahi F.  2012.  ncRNAclassifier: a tool for detection and classification of transposable element sequences in RNA hairpins.. BMC Bioinformatics. 13:246.
D'Antonio M, Pendino V, Sinha S, Ciccarelli FD.  2012.  Network of Cancer Genes (NCG 3.0): integration and analysis of genetic and network properties of cancer genes.. Nucleic Acids Res. 40(Database issue):D978-83.
Bu D, Yu K, Sun S, Xie C, Skogerbø G, Miao R, Xiao H, Liao Q, Luo H, Zhao G et al..  2012.  NONCODE v3.0: integrative annotation of long noncoding RNAs.. Nucleic Acids Res. 40(Database issue):D210-5.
Paschoal ARossi, Maracaja-Coutinho V, Setubal JCarlos, Simões ZLuz Paulin, Verjovski-Almeida S, Durham AMitchell.  2012.  Non-coding transcription characterization and annotation: a guide and web resource for non-coding RNA databases.. RNA Biol. 9(3):274-82.
Isakov O, Ronen R, Kovarsky J, Gabay A, Gan I, Modai S, Shomron N.  2012.  Novel insight into the non-coding repertoire through deep sequencing analysis.. Nucleic Acids Res. 40(11):e86.

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