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Found 1346 results
2012
Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN.  2012.  High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis.. Genome Res. 22(1):163-76.
Mitra S, Das S, Das S, Ghosal S, Chakrabarti J.  2012.  HNOCDB: a comprehensive database of genes and miRNAs relevant to head and neck and oral cancer.. Oral Oncol. 48(2):117-9.
Ragan C, Mowry BJ, Bauer DC.  2012.  Hybridization-based reconstruction of small non-coding RNA transcripts from deep sequencing data.. Nucleic Acids Res. 40(16):7633-43.
Kim B, Yu H-J, Park S-G, Shin JYoung, Oh M, Kim N, Mun J-H.  2012.  Identification and profiling of novel microRNAs in the Brassica rapa genome based on small RNA deep sequencing.. BMC Plant Biol. 12:218.
Gennarino VAlessandro, D'Angelo G, Dharmalingam G, Fernandez S, Russolillo G, Sanges R, Mutarelli M, Belcastro V, Ballabio A, Verde P et al..  2012.  Identification of microRNA-regulated gene networks by expression analysis of target genes.. Genome Res. 22(6):1163-72.
Joshi PKumar, Gupta D, Nandal UKumar, Khan Y, Mukherjee SKumar, Sanan-Mishra N.  2012.  Identification of mirtrons in rice using MirtronPred: a tool for predicting plant mirtrons.. Genomics. 99(6):370-5.
Li W, Zhang S, Liu C-C, Zhou XJasmine.  2012.  Identifying multi-layer gene regulatory modules from multi-dimensional genomic data.. Bioinformatics. 28(19):2458-66.
Kao S, Shiau C-K, Gu D-L, Ho C-M, Su W-H, Chen C-F, Lin C-H, Jou Y-S.  2012.  IGDB.NSCLC: integrated genomic database of non-small cell lung cancer.. Nucleic Acids Res. 40(Database issue):D972-7.
Bleda M, Medina I, Alonso R, De Maria A, Salavert F, Dopazo J.  2012.  Inferring the regulatory network behind a gene expression experiment.. Nucleic Acids Res. 40(Web Server issue):W168-72.
Yan Z, Shah PK, Amin SB, Samur MK, Huang N, Wang X, Misra V, Ji H, Gabuzda D, Li C.  2012.  Integrative analysis of gene and miRNA expression profiles with transcription factor-miRNA feed-forward loops identifies regulators in human cancers.. Nucleic Acids Res. 40(17):e135.
Lo E, Soleilhac E, Martinez A, Lafanechère L, Nadon R.  2012.  Intensity quantile estimation and mapping--a novel algorithm for the correction of image non-uniformity bias in HCS data.. Bioinformatics. 28(20):2632-9.
Loher P, Rigoutsos I.  2012.  Interactive exploration of RNA22 microRNA target predictions.. Bioinformatics. 28(24):3322-3.
Zacher B, Abnaof K, Gade S, Younesi E, Tresch A, Fröhlich H.  2012.  Joint Bayesian inference of condition-specific miRNA and transcription factor activities from combined gene and microRNA expression data.. Bioinformatics. 28(13):1714-20.
Klein J, Jupp S, Moulos P, Fernandez M, Buffin-Meyer B, Casemayou A, Chaaya R, Charonis A, Bascands J-L, Stevens R et al..  2012.  The KUPKB: a novel Web application to access multiomics data on kidney disease.. FASEB J. 26(5):2145-53.
Farkas IJ, Szántó-Várnagy A, Korcsmáros T.  2012.  Linking proteins to signaling pathways for experiment design and evaluation.. PLoS One. 7(4):e36202.
Bisognin A, Sales G, Coppe A, Bortoluzzi S, Romualdi C.  2012.  MAGIA²: from miRNA and genes expression data integrative analysis to microRNA-transcription factor mixed regulatory circuits (2012 update).. Nucleic Acids Res. 40(Web Server issue):W13-21.
Piriyapongsa J, Bootchai C, Ngamphiw C, Tongsima S.  2012.  microPIR: an integrated database of microRNA target sites within human promoter sequences.. PLoS One. 7(3):e33888.
Bülow L, Bolívar JC, Ruhe J, Brill Y, Hehl R.  2012.  'MicroRNA Targets', a new AthaMap web-tool for genome-wide identification of miRNA targets in Arabidopsis thaliana.. BioData Min. 5(1):7.
Russo F, Di Bella S, Nigita G, Macca V, Laganà A, Giugno R, Pulvirenti A, Ferro A.  2012.  miRandola: extracellular circulating microRNAs database.. PLoS One. 7(10):e47786.
Rahman MEamin, Islam R, Islam S, Mondal SIslam, Amin MRuhul.  2012.  MiRANN: a reliable approach for improved classification of precursor microRNA using Artificial Neural Network model.. Genomics. 99(4):189-94.
Jha A, Chauhan R, Mehra M, Singh HRussiachan, Shankar R.  2012.  miR-BAG: bagging based identification of microRNA precursors.. PLoS One. 7(9):e45782.
Jeggari A, Marks DS, Larsson E.  2012.  miRcode: a map of putative microRNA target sites in the long non-coding transcriptome.. Bioinformatics. 28(15):2062-3.
Xu J, Li Y-H.  2012.  miRDeathDB: a database bridging microRNAs and the programmed cell death.. Cell Death Differ. 19(9):1571.
Friedländer MR, Mackowiak SD, Li N, Chen W, Rajewsky N.  2012.  miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades.. Nucleic Acids Res. 40(1):37-52.
Xie F, Xiao P, Chen D, Xu L, Zhang B.  2012.  miRDeepFinder: a miRNA analysis tool for deep sequencing of plant small RNAs.. Plant Mol Biol.

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