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Found 1346 results
2014
Golbert DCF, Santana-van-Vliet E, Mundstein AS, Calfo V, Savino W, de Vasconcelos ATereza R.  2014.  Laminin-database v.2.0: an update on laminins in health and neuromuscular disorders.. Nucleic Acids Res. 42(Database issue):D426-9.
Ellwanger DChristian, Leonhardt JFlorian, Mewes H-W.  2014.  Large-scale modeling of condition-specific gene regulatory networks by information integration and inference.. Nucleic Acids Res. 42(21)
Dai H-J, Wu JChi-Yang, San Lin W-, Reyes AJames F, Rosa MAnne CDel, Syed-Abdul S, Tsai RTzong-Han, Hsu W-L.  2014.  LiverCancerMarkerRIF: a liver cancer biomarker interactive curation system combining text mining and expert annotations.. Database (Oxford). 2014
Das S, Ghosal S, Sen R, Chakrabarti J.  2014.  lnCeDB: database of human long noncoding RNA acting as competing endogenous RNA.. PLoS One. 9(6):e98965.
Chakraborty S, Deb A, Maji RKumar, Saha S, Ghosh Z.  2014.  LncRBase: an enriched resource for lncRNA information.. PLoS One. 9(9):e108010.
Chan W-L, Da Huang H-, Chang J-G.  2014.  lncRNAMap: a map of putative regulatory functions in the long non-coding transcriptome.. Comput Biol Chem. 50:41-9.
Li Z, Zhao Y, Liu X, Peng J, Guo H, Luo J.  2014.  LSD 2.0: an update of the leaf senescence database.. Nucleic Acids Res. 42(Database issue):D1200-5.
Kim J, Levy E, Ferbrache A, Stepanowsky P, Farcas C, Wang S, Brunner S, Bath T, Wu Y, Ohno-Machado L.  2014.  MAGI: a Node.js web service for fast microRNA-Seq analysis in a GPU infrastructure.. Bioinformatics. 30(19):2826-7.
Piriyapongsa J, Bootchai C, Ngamphiw C, Tongsima S.  2014.  microPIR2: a comprehensive database for human-mouse comparative study of microRNA-promoter interactions.. Database (Oxford). 2014:bau115.
Liu C, Rennie WA, Mallick B, Kanoria S, Long D, Wolenc A, C Carmack S, Ding Y.  2014.  MicroRNA binding sites in C. elegans 3' UTRs.. RNA Biol. 11(6):693-701.
Georgakilas G, Vlachos IS, Paraskevopoulou MD, Yang P, Zhang Y, Economides AN, Hatzigeorgiou AG.  2014.  microTSS: accurate microRNA transcription start site identification reveals a significant number of divergent pri-miRNAs.. Nat Commun. 5:5700.
Berillo O, Régnier M, Ivashchenko A.  2014.  miRAFinder and GeneAFinder scripts: large-scale searching for miRNA and related information in indexed literature abstracts.. Bioinformation. 10(8):539-43.
Kozomara A, Griffiths-Jones S.  2014.  miRBase: annotating high confidence microRNAs using deep sequencing data.. Nucleic Acids Res. 42(Database issue):D68-73.
Van Peer G, Lefever S, Anckaert J, Beckers A, Rihani A, Van Goethem A, Volders P-J, Zeka F, Ongenaert M, Mestdagh P et al..  2014.  miRBase Tracker: keeping track of microRNA annotation changes.. Database (Oxford). 2014
Zou Q, Mao Y, Hu L, Wu Y, Ji Z.  2014.  miRClassify: an advanced web server for miRNA family classification and annotation.. Comput Biol Med. 45:157-60.
Hansen TB, Venø MT, Kjems J, Damgaard CK.  2014.  miRdentify: high stringency miRNA predictor identifies several novel animal miRNAs.. Nucleic Acids Res. 42(16):e124.
Hinske LChristian, França GS, Torres HAM, Ohara DT, Lopes-Ramos CM, Heyn J, Reis LFL, Ohno-Machado L, Kreth S, Galante PAF.  2014.  miRIAD-integrating microRNA inter- and intragenic data.. Database (Oxford). 2014
Yang K-C, Hsu C-L, Lin C-C, Juan H-F, Huang H-C.  2014.  Mirin: identifying microRNA regulatory modules in protein-protein interaction networks.. Bioinformatics. 30(17):2527-8.
Menor M, Ching T, Zhu X, Garmire D, Garmire LX.  2014.  mirMark: a site-level and UTR-level classifier for miRNA target prediction.. Genome Biol. 15(10):500.
Cer RZ, J Herrera-Galeano E, Anderson JJ, Bishop-Lilly KA, Mokashi VP.  2014.  miRNA Temporal Analyzer (mirnaTA): a bioinformatics tool for identifying differentially expressed microRNAs in temporal studies using normal quantile transformation.. Gigascience. 3:20.
Szczesniak MW, Makalowska I.  2014.  miRNEST 2.0: a database of plant and animal microRNAs.. Nucleic Acids Res. 42(Database issue):D74-7.
Kuenne C, Preussner J, Herzog M, Braun T, Looso M.  2014.  MIRPIPE: quantification of microRNAs in niche model organisms.. Bioinformatics. 30(23):3412-3.
An J, Lai J, Sajjanhar A, Lehman ML, Nelson CC.  2014.  miRPlant: an integrated tool for identification of plant miRNA from RNA sequencing data.. BMC Bioinformatics. 15:275.
Lei J, Sun Y.  2014.  miR-PREFeR: an accurate, fast and easy-to-use plant miRNA prediction tool using small RNA-Seq data.. Bioinformatics. 30(19):2837-9.
Friedman Y, Karsenty S, Linial M.  2014.  miRror-Suite: decoding coordinated regulation by microRNAs.. Database (Oxford). 2014

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