You are here

Home

Biblio

Found 1346 results
2018
Icay K, Liu C, Hautaniemi S.  2018.  Dynamic visualization of multi-level molecular data: The Director package in R.. Comput Methods Programs Biomed. 153:129-136.
Koo J, Zhang J, Chaterji S.  2018.  Tiresias: Context-sensitive Approach to Decipher the Presence and Strength of MicroRNA Regulatory Interactions.. Theranostics. 8(1):277-291.
2017
Bhat MK, Gadekar VP, Jain A, Paul B, Rai PS, Satyamoorthy K.  2017.  1-CMDb: A Curated Database of Genomic Variations of the One-Carbon Metabolism Pathway.. Public Health Genomics.
Dai E, Wang J, Yang F, Zhou X, Song Q, Wang S, Yu X, Liu D, Yang Q, Dai H et al..  2017.  Accurate prediction and elucidation of drug resistance based on the robust and reproducible chemoresponse communities.. Int J Cancer.
Ye J, Wang L, Li S, Zhang Q, Zhang Q, Tang W, Wang K, Song K, Sablok G, Sun X et al..  2017.  AtCircDB: a tissue-specific database for Arabidopsis circular RNAs.. Brief Bioinform.
Wu J, Hu S, Chen Y, Li Z, Zhang J, Yuan H, Shi Q, Shao N, Ying X.  2017.  BCIP: a gene-centered platform for identifying potential regulatory genes in breast cancer.. Sci Rep. 7:45235.
Xu Y, Yang H, Wu T, Dong Q, Sun Z, Shang D, Li F, Xu Y, Su F, Liu S et al..  2017.  BioM2MetDisease: a manually curated database for associations between microRNAs, metabolites, small molecules and metabolic diseases.. Database (Oxford). 2017
Liu B.  2017.  BioSeq-Analysis: a platform for DNA, RNA and protein sequence analysis based on machine learning approaches.. Brief Bioinform.
Zagganas K, Vergoulis T, Paraskevopoulou MD, Vlachos IS, Skiadopoulos S, Dalamagas T.  2017.  BUFET: boosting the unbiased miRNA functional enrichment analysis using bitsets.. BMC Bioinformatics. 18(1):399.
Ding J, Li X, Hu H.  2017.  CCmiR: A computational approach for competitive and cooperative microRNA binding prediction.. Bioinformatics.
You Q, Xu W, Zhang K, Zhang L, Yi X, Yao D, Wang C, Zhang X, Zhao X, Provart NJ et al..  2017.  ccNET: Database of co-expression networks with functional modules for diploid and polyploid Gossypium.. Nucleic Acids Res. 45(D1):D1090-D1099.
Zhou K-R, Liu S, Sun W-J, Zheng L-L, Zhou H, Yang J-H, Qu L-H.  2017.  ChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data.. Nucleic Acids Res. 45(D1):D43-D50.
Baldassarre A, Felli C, Prantera G, Masotti A.  2017.  Circulating microRNAs and Bioinformatics Tools to Discover Novel Diagnostic Biomarkers of Pediatric Diseases.. Genes (Basel). 8(9)
Davis JA, Saunders SJ, Mann M, Backofen R.  2017.  Combinatorial ensemble miRNA target prediction of co-regulation networks with non-prediction data.. Nucleic Acids Res. 45(15):8745-8757.
Shukla V, Varghese VKoshy, Kabekkodu SPrasada, Mallya S, Satyamoorthy K.  2017.  A compilation of Web-based research tools for miRNA analysis.. Brief Funct Genomics. 16(5):249-273.
Juzenas S, Venkatesh G, Hübenthal M, Hoeppner MP, Du ZGracie, Paulsen M, Rosenstiel P, Senger P, Hofmann-Apitius M, Keller A et al..  2017.  A comprehensive, cell specific microRNA catalogue of human peripheral blood.. Nucleic Acids Res. 45(16):9290-9301.
Beckers M, Mohorianu I, Stocks M, Applegate C, Dalmay T, Moulton V.  2017.  Comprehensive processing of high-throughput small RNA sequencing data including quality checking, normalization, and differential expression analysis using the UEA sRNA Workbench.. RNA. 23(6):823-835.
Zararsız G, Goksuluk D, Korkmaz S, Eldem V, Zararsiz GErturk, Duru IParug, Ozturk A.  2017.  A comprehensive simulation study on classification of RNA-Seq data.. PLoS One. 12(8):e0182507.
Morgado L, Johannes F.  2017.  Computational tools for plant small RNA detection and categorization.. Brief Bioinform.
Huang Y-A, Chan KCC, You Z-H.  2017.  Constructing Prediction Models from Expression Profiles for Large Scale lncRNA-miRNA Interaction Profiling.. Bioinformatics.
Andrews E, Wang Y, Xia T, Cheng W, Cheng C.  2017.  Contextual Refinement of Regulatory Targets Reveals Effects on Breast Cancer Prognosis of the Regulome.. PLoS Comput Biol. 13(1):e1005340.
Wan C, Gao J, Zang Q, Ban R, Zhang H, Zhang Y.  2017.  CPSS 2.0: a computational platform update for the analysis of small RNA sequencing data.. Bioinformatics.
Ru B, Sun J, Tong Y, Wong CNgar, Chandra A, Tang ATsz So, Chow LKa Yue, Wun WLam, Levitskaya Z, Zhang J.  2017.  CR2Cancer: a database for chromatin regulators in human cancer.. Nucleic Acids Res.
Wu W-S, Tu B-W, Chen T-T, Hou S-W, Tseng JT.  2017.  CSmiRTar: Condition-Specific microRNA targets database.. PLoS One. 12(7):e0181231.
Yang Z, Wu L, Wang A, Tang W, Zhao Y, Zhao H, Teschendorff AE.  2017.  dbDEMC 2.0: updated database of differentially expressed miRNAs in human cancers.. Nucleic Acids Res. 45(D1):D812-D818.

Pages