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Filters: Author is Yang, Jian-Hua  [Clear All Filters]
2017
Zhou K-R, Liu S, Sun W-J, Zheng L-L, Zhou H, Yang J-H, Qu L-H.  2017.  ChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data.. Nucleic Acids Res. 45(D1):D43-D50.
Zheng L-L, Zhou K-R, Liu S, Zhang D-Y, Wang Z-L, Chen Z-R, Yang J-H, Qu L-H.  2017.  dreamBase: DNA modification, RNA regulation and protein binding of expressed pseudogenes in human health and disease.. Nucleic Acids Res.
Zheng L-L, Deng K-W, Deng A-C, Wu J, Yang J-H, Lun Z-R, Qu L-H.  2017.  Exo-miRExplorer: A Comprehensive Resource for Exploring and Comparatively Analyzing Exogenous MicroRNAs.. Front Microbiol. 8:126.
Xuan J-J, Sun W-J, Lin P-H, Zhou K-R, Liu S, Zheng L-L, Qu L-H, Yang J-H.  2017.  RMBase v2.0: deciphering the map of RNA modifications from epitranscriptome sequencing data.. Nucleic Acids Res.
2016
Zheng L-L, Li J-H, Wu J, Sun W-J, Liu S, Wang Z-L, Zhou H, Yang J-H, Qu L-H.  2016.  deepBase v2.0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data.. Nucleic Acids Res. 44(D1):D196-202.
Sun W-J, Li J-H, Liu S, Wu J, Zhou H, Qu L-H, Yang J-H.  2016.  RMBase: a resource for decoding the landscape of RNA modifications from high-throughput sequencing data.. Nucleic Acids Res. 44(D1):D259-65.
Zheng L-L, Xu W-L, Liu S, Sun W-J, Li J-H, Wu J, Yang J-H, Qu L-H.  2016.  tRF2Cancer: A web server to detect tRNA-derived small RNA fragments (tRFs) and their expression in multiple cancers.. Nucleic Acids Res. 44(W1):W185-93.
2015
Guo Z-W, Xie C, Yang J-R, Li J-H, Yang J-H, Zheng L.  2015.  MtiBase: a database for decoding microRNA target sites located within CDS and 5'UTR regions from CLIP-Seq and expression profile datasets.. Database (Oxford). 2015
Liu S, Li J-H, Wu J, Zhou K-R, Zhou H, Yang J-H, Qu L-H.  2015.  StarScan: a web server for scanning small RNA targets from degradome sequencing data.. Nucleic Acids Res. 43(W1):W480-6.
2014
Li J-H, Liu S, Zhou H, Qu L-H, Yang J-H.  2014.  starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data.. Nucleic Acids Res. 42(Database issue):D92-7.
2013
Yang J-H, Li J-H, Jiang S, Zhou H, Qu L-H.  2013.  ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data.. Nucleic Acids Res. 41(Database issue):D177-87.
Yang J-H, Qu L-H.  2013.  Discovery of microRNA regulatory networks by integrating multidimensional high-throughput data.. Adv Exp Med Biol. 774:251-66.
2012
Yang J-H, Qu L-H.  2012.  DeepBase: annotation and discovery of microRNAs and other noncoding RNAs from deep-sequencing data.. Methods Mol Biol. 822:233-48.
2011
Yang J-H, Li J-H, Shao P, Zhou H, Chen Y-Q, Qu L-H.  2011.  starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data.. Nucleic Acids Res. 39(Database issue):D202-9.
2010
Yang J-H, Shao P, Zhou H, Chen Y-Q, Qu L-H.  2010.  deepBase: a database for deeply annotating and mining deep sequencing data.. Nucleic Acids Res. 38(Database issue):D123-30.
Zhang Y, Guan D-G, Yang J-H, Shao P, Zhou H, Qu L-H.  2010.  ncRNAimprint: a comprehensive database of mammalian imprinted noncoding RNAs.. RNA. 16(10):1889-901.