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Found 1346 results
2016
Lu Q, Powles RLee, Wang Q, He BJulie, Zhao H.  2016.  Integrative Tissue-Specific Functional Annotations in the Human Genome Provide Novel Insights on Many Complex Traits and Improve Signal Prioritization in Genome Wide Association Studies.. PLoS Genet. 12(4):e1005947.
Dutta B, Azhir A, Merino L-H, Guo Y, Revanur S, Madhamshettiwar PB, Germain RN, Smith JA, Simpson KJ, Martin SE et al..  2016.  An interactive web-based application for Comprehensive Analysis of RNAi-screen Data.. Nat Commun. 7:10578.
Cheng L, Shi H, Wang Z, Hu Y, Yang H, Zhou C, Sun J, Zhou M.  2016.  IntNetLncSim: an integrative network analysis method to infer human lncRNA functional similarity.. Oncotarget.
Zhang Y, Zang Q, Xu B, Zheng W, Ban R, Zhang H, Yang Y, Hao Q, Iqbal F, Li A et al..  2016.  IsomiR Bank: a research resource for tracking IsomiRs.. Bioinformatics. 32(13):2069-71.
Urgese G, Paciello G, Acquaviva A, Ficarra E.  2016.  isomiR-SEA: an RNA-Seq analysis tool for miRNAs/isomiRs expression level profiling and miRNA-mRNA interaction sites evaluation.. BMC Bioinformatics. 17:148.
Vitsios DM, Davis MP, van Dongen S, Enright AJ.  2016.  Large-scale analysis of microRNA expression, epi-transcriptomic features and biogenesis.. Nucleic Acids Res.
Chu A, Robertson G, Brooks D, Mungall AJ, Birol I, Coope R, Ma Y, Jones S, Marra MA.  2016.  Large-scale profiling of microRNAs for The Cancer Genome Atlas.. Nucleic Acids Res. 44(1):e3.
Bao Y, Hayashida M, Akutsu T.  2016.  LBSizeCleav: improved support vector machine (SVM)-based prediction of Dicer cleavage sites using loop/bulge length.. BMC Bioinformatics. 17(1):487.
Lu Y, Leslie CS.  2016.  Learning to Predict miRNA-mRNA Interactions from AGO CLIP Sequencing and CLASH Data.. PLoS Comput Biol. 12(7):e1005026.
Bayer J, Kuenne C, Preussner J, Looso M.  2016.  LimiTT: link miRNAs to targets.. BMC Bioinformatics. 17(1):210.
Gong J, Liu C, Liu W, Xiang Y, Diao L, Guo A-Y, Han L.  2016.  LNCediting: a database for functional effects of RNA editing in lncRNAs.. Nucleic Acids Res.
Andorf CM, Cannon EK, Portwood JL, Gardiner JM, Harper LC, Schaeffer ML, Braun BL, Campbell DA, Vinnakota AG, Sribalusu VV et al..  2016.  MaizeGDB update: new tools, data and interface for the maize model organism database.. Nucleic Acids Res. 44(D1):D1195-201.
Chan W-C, Lin W-C.  2016.  MetaMirClust: Discovery and Exploration of Evolutionarily Conserved miRNA Clusters.. Methods Mol Biol. 1375:75-89.
Andrés-León E, Núñez-Torres R, Rojas AM.  2016.  miARma-Seq: a comprehensive tool for miRNA, mRNA and circRNA analysis.. Sci Rep. 6:25749.
Mennigen JA, Zhang D.  2016.  MicroTrout: A comprehensive, genome-wide miRNA target prediction framework for rainbow trout, Oncorhynchus mykiss.. Comp Biochem Physiol Part D Genomics Proteomics. 20:19-26.
Backes C, Khaleeq QT, Meese E, Keller A.  2016.  miEAA: microRNA enrichment analysis and annotation.. Nucleic Acids Res. 44(W1):W110-6.
Vila-Casadesús M, Gironella M, Lozano JJosé.  2016.  MiRComb: An R Package to Analyse miRNA-mRNA Interactions. Examples across Five Digestive Cancers.. PLoS One. 11(3):e0151127.
Chen X.  2016.  miREFRWR: a novel disease-related microRNA-environmental factor interactions prediction method.. Mol Biosyst. 12(2):624-33.
Gupta S, Ross KE, Tudor CO, Wu CH, Schmidt CJ, Vijay-Shanker K.  2016.  miRiaD: A Text Mining Tool for Detecting Associations of microRNAs with Diseases.. J Biomed Semantics. 7(1):9.
Guo L, Yu J, Liang T, Zou Q.  2016.  miR-isomiRExp: a web-server for the analysis of expression of miRNA at the miRNA/isomiR levels.. Sci Rep. 6:23700.
Yu L, Shao C, Ye X, Meng Y, Zhou Y, Chen M.  2016.  miRNA Digger: a comprehensive pipeline for genome-wide novel miRNA mining.. Sci Rep. 6:18901.
Marques YBento, Oliveira Ade Paiva, Vasconcelos ATereza Rib, Cerqueira FRibeiro.  2016.  Mirnacle: machine learning with SMOTE and random forest for improving selectivity in pre-miRNA ab initio prediction.. BMC Bioinformatics. 17(Suppl 18):474.
Tav C, Tempel S, Poligny L, Tahi F.  2016.  miRNAFold: a web server for fast miRNA precursor prediction in genomes.. Nucleic Acids Res. 44(W1):W181-4.
Haunsberger SJ, Connolly NMC, Prehn JHM.  2016.  miRNAmeConverter: an R/bioconductor package for translating mature miRNA names to different miRBase versions.. Bioinformatics.
Barta T, Peskova L, Hampl A.  2016.  miRNAsong: a web-based tool for generation and testing of miRNA sponge constructs in silico.. Sci Rep. 6:36625.

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