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Found 1346 results
2016
Szcześniak MW, Rosikiewicz W, Makałowska I.  2016.  CANTATAdb: A Collection of Plant Long Non-Coding RNAs.. Plant Cell Physiol. 57(1):e8.
Su EChia-Yu, Chen Y-S, Tien Y-C, Liu J, Ho B-C, Yu S-L, Singh S.  2016.  ChemiRs: a web application for microRNAs and chemicals.. BMC Bioinformatics. 17:167.
Vrahatis AG, Dimitrakopoulou K, Balomenos P, Tsakalidis AK, Bezerianos A.  2016.  CHRONOS: a time-varying method for microRNA-mediated subpathway enrichment analysis.. Bioinformatics. 32(6):884-92.
Dudekula DB, Panda AC, Grammatikakis I, De S, Abdelmohsen K, Gorospe M.  2016.  CircInteractome: A web tool for exploring circular RNAs and their interacting proteins and microRNAs.. RNA Biol. 13(1):34-42.
Liu Y-C, Li J-R, Sun C-H, Andrews E, Chao R-F, Lin F-M, Weng S-L, Da Hsu S-, Huang C-C, Cheng C et al..  2016.  CircNet: a database of circular RNAs derived from transcriptome sequencing data.. Nucleic Acids Res. 44(D1):D209-15.
Maragkakis M, Alexiou P, Nakaya T, Mourelatos Z.  2016.  CLIPSeqTools--a novel bioinformatics CLIP-seq analysis suite.. RNA. 22(1):1-9.
List M, Schmidt S, Christiansen H, Rehmsmeier M, Tan Q, Mollenhauer J, Baumbach J.  2016.  Comprehensive analysis of high-throughput screens with HiTSeekR.. Nucleic Acids Res. 44(14):6639-48.
Yuan J, Zhang P, Cui Y, Wang J, Skogerbø G, Huang D-W, Chen R, He S.  2016.  Computational identification of piRNA targets on mouse mRNAs.. Bioinformatics. 32(8):1170-7.
Krasnov GS, Dmitriev AA, Melnikova NV, Zaretsky AR, Nasedkina TV, Zasedatelev AS, Senchenko VN, Kudryavtseva AV.  2016.  CrossHub: a tool for multi-way analysis of The Cancer Genome Atlas (TCGA) in the context of gene expression regulation mechanisms.. Nucleic Acids Res. 44(7):e62.
Shen Y, Yao H, Li A, Wang M.  2016.  CSCdb: a cancer stem cells portal for markers, related genes and functional information.. Database (Oxford). 2016
Politano G, Orso F, Raimo M, Benso A, Savino A, Taverna D, Di Carlo S.  2016.  CyTRANSFINDER: a Cytoscape 3.3 plugin for three-component (TF, gene, miRNA) signal transduction pathway construction.. BMC Bioinformatics. 17:157.
Leung YYee, Kuksa PP, Amlie-Wolf A, Valladares O, Ungar LH, Kannan S, Gregory BD, San Wang L-.  2016.  DASHR: database of small human noncoding RNAs.. Nucleic Acids Res. 44(D1):D216-22.
Calura E, Pizzini S, Bisognin A, Coppe A, Sales G, Gaffo E, Fanelli T, Mannarelli C, Zini R, Norfo R et al..  2016.  A data-driven network model of primary myelofibrosis: transcriptional and post-transcriptional alterations in CD34+ cells.. Blood Cancer J. 6(6):e439.
Ouyang J, Sun Y, Li W, Zhang W, Wang D, Liu X, Lin Y, Lian B, Xie L.  2016.  dbPHCC: a database of prognostic biomarkers for hepatocellular carcinoma that provides online prognostic modeling.. Biochim Biophys Acta.
Zhang Y, Zang Q, Zhang H, Ban R, Yang Y, Iqbal F, Li A, Shi Q.  2016.  DeAnnIso: a tool for online detection and annotation of isomiRs from small RNA sequencing data.. Nucleic Acids Res. 44(W1):W166-75.
Zheng L-L, Li J-H, Wu J, Sun W-J, Liu S, Wang Z-L, Zhou H, Yang J-H, Qu L-H.  2016.  deepBase v2.0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data.. Nucleic Acids Res. 44(D1):D196-202.
Paraskevopoulou MD, Vlachos IS, Karagkouni D, Georgakilas G, Kanellos I, Vergoulis T, Zagganas K, Tsanakas P, Floros E, Dalamagas T et al..  2016.  DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts.. Nucleic Acids Res. 44(D1):D231-8.
Vlachos IS, Vergoulis T, Paraskevopoulou MD, Lykokanellos F, Georgakilas G, Georgiou P, Chatzopoulos S, Karagkouni D, Christodoulou F, Dalamagas T et al..  2016.  DIANA-mirExTra v2.0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data.. Nucleic Acids Res. 44(W1):W128-34.
Georgakilas G, Vlachos IS, Zagganas K, Vergoulis T, Paraskevopoulou MD, Kanellos I, Tsanakas P, Dellis D, Fevgas A, Dalamagas T et al..  2016.  DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators.. Nucleic Acids Res. 44(D1):D190-5.
Bai Y, Ding L, Baker S, Bai JM, Rath E, Jiang F, Wu J, Jiang H, Stuart G.  2016.  Dissecting the biological relationship between TCGA miRNA and mRNA sequencing data using MMiRNA-Viewer.. BMC Bioinformatics. 17(Suppl 13):336.
Fehlmann T, Ludwig N, Backes C, Meese E, Keller A.  2016.  Distribution of microRNA biomarker candidates in solid tissues and body fluids.. RNA Biol. :1-5.
Ludwig N, Leidinger P, Becker K, Backes C, Fehlmann T, Pallasch C, Rheinheimer S, Meder B, Stähler C, Meese E et al..  2016.  Distribution of miRNA expression across human tissues.. Nucleic Acids Res. 44(8):3865-77.
Shao Y, Wei J, Wu F, Zhang H, Yang D, Liang Z, Jin W.  2016.  DsTRD: Danshen Transcriptional Resource Database.. PLoS One. 11(2):e0149747.
Mooney C, Becker BA, Raoof R, Henshall DC.  2016.  EpimiRBase: a comprehensive database of microRNA-epilepsy associations.. Bioinformatics. 32(9):1436-8.
Keerthikumar S, Chisanga D, Ariyaratne D, Saffar HAl, Anand S, Zhao K, Samuel M, Pathan M, Jois M, Chilamkurti N et al..  2016.  ExoCarta: A Web-Based Compendium of Exosomal Cargo.. J Mol Biol. 428(4):688-92.

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