You are here

Home

Biblio

Found 11 results
Filters: Author is Backofen, Rolf  [Clear All Filters]
2017
Davis JA, Saunders SJ, Mann M, Backofen R.  2017.  Combinatorial ensemble miRNA target prediction of co-regulation networks with non-prediction data.. Nucleic Acids Res. 45(15):8745-8757.
2015
Preusse M, Marr C, Saunders S, Maticzka D, Lickert H, Backofen R, Theis F.  2015.  SimiRa: A tool to identify coregulation between microRNAs and RNA-binding proteins.. RNA Biol. 12(9):998-1009.
2014
Videm P, Rose D, Costa F, Backofen R.  2014.  BlockClust: efficient clustering and classification of non-coding RNAs from short read RNA-seq profiles.. Bioinformatics. 30(12):i274-82.
Wright PR, Georg J, Mann M, Sorescu DA, Richter AS, Lott S, Kleinkauf R, Hess WR, Backofen R.  2014.  CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains.. Nucleic Acids Res. 42(Web Server issue):W119-23.
2012
Mendes ND, Heyne S, Freitas AT, Sagot M-F, Backofen R.  2012.  Navigating the unexplored seascape of pre-miRNA candidates in single-genome approaches.. Bioinformatics. 28(23):3034-41.
2011
Seemann SE, Richter AS, Gesell T, Backofen R, Gorodkin J.  2011.  PETcofold: predicting conserved interactions and structures of two multiple alignments of RNA sequences.. Bioinformatics. 27(2):211-9.
Seemann SE, Menzel P, Backofen R, Gorodkin J.  2011.  The PETfold and PETcofold web servers for intra- and intermolecular structures of multiple RNA sequences.. Nucleic Acids Res. 39(Web Server issue):W107-11.
2010
Seemann SE, Richter AS, Gorodkin J, Backofen R.  2010.  Hierarchical folding of multiple sequence alignments for the prediction of structures and RNA-RNA interactions.. Algorithms Mol Biol. 5:22.
2009
Chitsaz H, Salari R, S Sahinalp C, Backofen R.  2009.  A partition function algorithm for interacting nucleic acid strands.. Bioinformatics. 25(12):i365-73.
2008
Busch A, Richter AS, Backofen R.  2008.  IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions.. Bioinformatics. 24(24):2849-56.
Seemann SE, Gorodkin J, Backofen R.  2008.  Unifying evolutionary and thermodynamic information for RNA folding of multiple alignments.. Nucleic Acids Res. 36(20):6355-62.