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Found 1346 results
2017
Wong NW, Chen Y, Chen S, Wang X.  2017.  OncomiR: An online resource for exploring pan-cancer microRNA dysregulation.. Bioinformatics.
Chao Y-T, Yen S-H, Yeh J-H, Chen W-C, Shih M-C.  2017.  Orchidstra 2.0-A Transcriptomics Resource for the Orchid Family.. Plant Cell Physiol.
Yue Z, Zheng Q, Neylon MT, Yoo M, Shin J, Zhao Z, Tan AChoon, Chen JY.  2017.  PAGER 2.0: an update to the pathway, annotated-list and gene-signature electronic repository for Human Network Biology.. Nucleic Acids Res.
Sinha D, Sengupta D, Bandyopadhyay S.  2017.  ParSel: Parallel Selection of Micro-RNAs for Survival Classification in Cancers.. Mol Inform. 36(7)
Yuan C, Meng X, Li X, Illing N, Ingle RA, Wang J, Chen M.  2017.  PceRBase: a database of plant competing endogenous RNA.. Nucleic Acids Res. 45(D1):D1009-D1014.
Guan D, Yan B, Thieme C, Hua J, Zhu H, Boheler KR, Zhao Z, Kragler F, Xia Y, Zhang S.  2017.  PlaMoM: a comprehensive database compiles plant mobile macromolecules.. Nucleic Acids Res. 45(D1):D1021-D1028.
Chu Q, Zhang X, Zhu X, Liu C, Mao L, Ye C, Zhu Q-H, Fan L.  2017.  PlantcircBase: A Database for Plant Circular RNAs.. Mol Plant. 10(8):1126-1128.
Dawson HD, Chen C, Gaynor B, Shao J, Urban JF.  2017.  The porcine translational research database: a manually curated, genomics and proteomics-based research resource.. BMC Genomics. 18(1):643.
Hu B, Yang Y-CT, Huang Y, Zhu Y, Lu ZJohn.  2017.  POSTAR: a platform for exploring post-transcriptional regulation coordinated by RNA-binding proteins.. Nucleic Acids Res. 45(D1):D104-D114.
Prabahar A, Natarajan J.  2017.  Prediction of microRNAs involved in immune system diseases through network based features.. J Biomed Inform. 65:34-45.
Andrés-León E, Gómez-López G, Pisano DG.  2017.  Prediction of miRNA-mRNA Interactions Using miRGate.. Methods Mol Biol. 1580:225-237.
Zhao S, Gordon W, Du S, Zhang C, He W, Xi L, Mathur S, Agostino M, Paradis T, von Schack D et al..  2017.  QuickMIRSeq: a pipeline for quick and accurate quantification of both known miRNAs and isomiRs by jointly processing multiple samples from microRNA sequencing.. BMC Bioinformatics. 18(1):180.
Junge A, Refsgaard JC, Garde C, Pan X, Santos A, Alkan F, Anthon C, von Mering C, Workman CT, Jensen LJuhl et al..  2017.  RAIN: RNA-protein Association and Interaction Networks.. Database (Oxford). 2017
Le D-H, Verbeke L, Son LHoang, Chu D-T, Pham V-H.  2017.  Random walks on mutual microRNA-target gene interaction network improve the prediction of disease-associated microRNAs.. BMC Bioinformatics. 18(1):479.
Choubey J, Choudhari JKant, Patel A, Verma MKumar.  2017.  Respiratory cancer database: An open access database of respiratory cancer gene and miRNA.. J Cancer Res Ther. 13(3):487-490.
Cantini L, Caselle M, Forget A, Zinovyev A, Barillot E, Martignetti L.  2017.  A review of computational approaches detecting microRNAs involved in cancer.. Front Biosci (Landmark Ed). 22:1774-1791.
Fehlmann T, Sahay S, Keller A, Backes C.  2017.  A review of databases predicting the effects of SNPs in miRNA genes or miRNA-binding sites.. Brief Bioinform.
Gong J, Shao D, Xu K, Lu Z, Lu ZJohn, Yang YT, Zhang QCliff.  2017.  RISE: a database of RNA interactome from sequencing experiments.. Nucleic Acids Res.
Chen X, Wu Q-F, Yan G-Y.  2017.  RKNNMDA: Ranking-based KNN for MiRNA-Disease Association prediction.. RNA Biol. 14(7):952-962.
Xuan J-J, Sun W-J, Lin P-H, Zhou K-R, Liu S, Zheng L-L, Qu L-H, Yang J-H.  2017.  RMBase v2.0: deciphering the map of RNA modifications from epitranscriptome sequencing data.. Nucleic Acids Res.
Pan X, Bin Shen H-.  2017.  RNA-protein binding motifs mining with a new hybrid deep learning based cross-domain knowledge integration approach.. BMC Bioinformatics. 18(1):136.
Kleyman M, Sefer E, Nicola T, Espinoza C, Chhabra D, Hagood JS, Kaminski N, Ambalavanan N, Bar-Joseph, iv Z.  2017.  Selecting the most appropriate time points to profile in high-throughput studies.. Elife. 6
Budak G, Srivastava R, Janga SChandra.  2017.  Seten: A tool for systematic identification and comparison of processes, phenotypes and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles.. RNA.
Cava C, Colaprico A, Bertoli G, Graudenzi A, Silva TC, Olsen C, Noushmehr H, Bontempi G, Mauri G, Castiglioni I.  2017.  SpidermiR: An R/Bioconductor Package for Integrative Analysis with miRNA Data.. Int J Mol Sci. 18(2)
Wu X, Kim T-K, Baxter D, Scherler K, Gordon A, Fong O, Etheridge A, Galas DJ, Wang K.  2017.  sRNAnalyzer-a flexible and customizable small RNA sequencing data analysis pipeline.. Nucleic Acids Res. 45(21):12140-12151.

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