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Found 1346 results
2008
Betel D, Wilson M, Gabow A, Marks DS, Sander C.  2008.  The microRNA.org resource: targets and expression.. Nucleic Acids Res. 36(Database issue):D149-53.
Griffiths-Jones S, Saini HKaur, van Dongen S, Enright AJ.  2008.  miRBase: tools for microRNA genomics.. Nucleic Acids Res. 36(Database issue):D154-8.
Wang X.  2008.  miRDB: a microRNA target prediction and functional annotation database with a wiki interface.. RNA. 14(6):1012-7.
Yan X-qi, Tu K, Xie L, Li Y-xue, Yin B, Gong Y-hua, Yuan J-gang, Qiang B-qin, Peng X-zhong.  2008.  MiRE: a graphical R package for microRNA-related analysis.. Chin Med Sci J. 23(4):202-4.
Ritchie W, Théodule F-X, Gautheret D.  2008.  Mireval: a web tool for simple microRNA prediction in genome sequences.. Bioinformatics. 24(11):1394-6.
Nam S, Kim B, Shin S, Lee S.  2008.  miRGator: an integrated system for functional annotation of microRNAs.. Nucleic Acids Res. 36(Database issue):D159-64.
Da Hsu S-, Chu C-H, Tsou A-P, Chen S-J, Chen H-C, Hsu PWei-Che, Wong Y-H, Chen Y-H, Chen G-H, Da Huang H-.  2008.  miRNAMap 2.0: genomic maps of microRNAs in metazoan genomes.. Nucleic Acids Res. 36(Database issue):D165-9.
Artzi S, Kiezun A, Shomron N.  2008.  miRNAminer: a tool for homologous microRNA gene search.. BMC Bioinformatics. 9:39.
Yang Y, Wang Y-P, Bin Li K-.  2008.  MiRTif: a support vector machine-based microRNA target interaction filter.. BMC Bioinformatics. 9 Suppl 12:S4.
Hammell M, Long D, Zhang L, Lee A, C Carmack S, Han M, Ding Y, Ambros V.  2008.  mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein-enriched transcripts.. Nat Methods. 5(9):813-9.
He S, Liu C, Skogerbø G, Zhao H, Wang J, Liu T, Bai B, Zhao Y, Chen R.  2008.  NONCODE v2.0: decoding the non-coding.. Nucleic Acids Res. 36(Database issue):D170-2.
Jabbari H, Condon A, Zhao S.  2008.  Novel and efficient RNA secondary structure prediction using hierarchical folding.. J Comput Biol. 15(2):139-63.
Lu ZJohn, Mathews DH.  2008.  OligoWalk: an online siRNA design tool utilizing hybridization thermodynamics.. Nucleic Acids Res. 36(Web Server issue):W104-8.
Prüfer K, Stenzel U, Dannemann M, Green RE, Lachmann M, Kelso J.  2008.  PatMaN: rapid alignment of short sequences to large databases.. Bioinformatics. 24(13):1530-1.
S Lakshmi S, Agrawal S.  2008.  piRNABank: a web resource on classified and clustered Piwi-interacting RNAs.. Nucleic Acids Res. 36(Database issue):D173-7.
Wang X, Naqa IMEl.  2008.  Prediction of both conserved and nonconserved microRNA targets in animals.. Bioinformatics. 24(3):325-32.
Dai X, Zhao PXuechun.  2008.  pssRNAMiner: a plant short small RNA regulatory cascade analysis server.. Nucleic Acids Res. 36(Web Server issue):W114-8.
Moretti S, Wilm A, Higgins DG, Xenarios I, Notredame C.  2008.  R-Coffee: a web server for accurately aligning noncoding RNA sequences.. Nucleic Acids Res. 36(Web Server issue):W10-3.
Gama-Castro S, Jiménez-Jacinto V, Peralta-Gil M, Santos-Zavaleta A, Peñaloza-Spinola MI, Contreras-Moreira B, Segura-Salazar J, Muñiz-Rascado L, Martínez-Flores I, Salgado H et al..  2008.  RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation.. Nucleic Acids Res. 36(Database issue):D120-4.
Capriotti E, Marti-Renom MA.  2008.  RNA structure alignment by a unit-vector approach.. Bioinformatics. 24(16):i112-8.
Daub J, Gardner PP, Tate J, Ramsköld D, Manske M, Scott WG, Weinberg Z, Griffiths-Jones S, Bateman A.  2008.  The RNA WikiProject: community annotation of RNA families.. RNA. 14(12):2462-4.
Tafer H, Hofacker IL.  2008.  RNAplex: a fast tool for RNA-RNA interaction search.. Bioinformatics. 24(22):2657-63.
Moxon S, Moulton V, Kim JT.  2008.  A scoring matrix approach to detecting miRNA target sites.. Algorithms Mol Biol. 3:3.
Forman JJ, Legesse-Miller A, Coller HA.  2008.  A search for conserved sequences in coding regions reveals that the let-7 microRNA targets Dicer within its coding sequence.. Proc Natl Acad Sci U S A. 105(39):14879-84.
Lee MT, Kim J.  2008.  Self containment, a property of modular RNA structures, distinguishes microRNAs.. PLoS Comput Biol. 4(8):e1000150.

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