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Found 1346 results
2007
Kin T, Yamada K, Terai G, Okida H, Yoshinari Y, Ono Y, Kojima A, Kimura Y, Komori T, Asai K.  2007.  fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences.. Nucleic Acids Res. 35(Database issue):D145-8.
Antin PB, Kaur S, Stanislaw S, Davey S, Konieczka JH, Yatskievych TA, Darnell DK.  2007.  Gallus expression in situ hybridization analysis: a chicken embryo gene expression database.. Poult Sci. 86(7):1472-7.
Darnell DK, Kaur S, Stanislaw S, Davey S, Konieczka JH, Yatskievych TA, Antin PB.  2007.  GEISHA: an in situ hybridization gene expression resource for the chicken embryo.. Cytogenet Genome Res. 117(1-4):30-5.
Costa IG, Roepcke S, Schliep A.  2007.  Gene expression trees in lymphoid development.. BMC Immunol. 8:25.
Carmona-Saez P, Chagoyen M, Tirado F, Carazo JM, Pascual-Montano A.  2007.  GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists.. Genome Biol. 8(1):R3.
Zhang Y, Luoh S-M, Hon LS, Baertsch R, Wood WI, Zhang Z.  2007.  GeneHub-GEPIS: digital expression profiling for normal and cancer tissues based on an integrated gene database.. Nucleic Acids Res. 35(Web Server issue):W152-8.
Horn T, Arziman Z, Berger J, Boutros M.  2007.  GenomeRNAi: a database for cell-based RNAi phenotypes.. Nucleic Acids Res. 35(Database issue):D492-7.
Jegga AG, Chen J, Gowrisankar S, Deshmukh MA, Gudivada RC, Kong S, Kaimal V, Aronow BJ.  2007.  GenomeTrafac: a whole genome resource for the detection of transcription factor binding site clusters associated with conventional and microRNA encoding genes conserved between mouse and human gene orthologs.. Nucleic Acids Res. 35(Database issue):D116-21.
Liu C-C, Lin C-C, Li K-C, Chen W-SE, Chen J-C, Yang M-T, Yang P-C, Chang P-C, Chen JJW.  2007.  Genome-wide identification of specific oligonucleotides using artificial neural network and computational genomic analysis.. BMC Bioinformatics. 8:164.
Reimand J, Kull M, Peterson H, Hansen J, Vilo J.  2007.  g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments.. Nucleic Acids Res. 35(Web Server issue):W193-200.
Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL et al..  2007.  High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes.. PLoS One. 2(2):e219.
Yan X, Chao T, Tu K, Zhang Y, Xie L, Gong Y, Yuan J, Qiang B, Peng X.  2007.  Improving the prediction of human microRNA target genes by using ensemble algorithm.. FEBS Lett. 581(8):1587-93.
Gaidatzis D, van Nimwegen E, Hausser J, Zavolan M.  2007.  Inference of miRNA targets using evolutionary conservation and pathway analysis.. BMC Bioinformatics. 8:69.
Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M et al..  2007.  A mammalian microRNA expression atlas based on small RNA library sequencing.. Cell. 129(7):1401-14.
Nobuta K, Vemaraju K, Meyers BC.  2007.  Methods for analysis of gene expression in plants using MPSS.. Methods Mol Biol. 406:387-408.
Grimson A, Farh KKai-How, Johnston WK, Garrett-Engele P, Lim LP, Bartel DP.  2007.  MicroRNA targeting specificity in mammals: determinants beyond seed pairing.. Mol Cell. 27(1):91-105.
Jiang P, Wu H, Wang W, Ma W, Sun X, Lu Z.  2007.  MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features.. Nucleic Acids Res. 35(Web Server issue):W339-44.
Tian F, Zhang H, Zhang X, Song C, Xia Y, Wu Y, Liu X.  2007.  miRAS: a data processing system for miRNA expression profiling study.. BMC Bioinformatics. 8:285.
Huang T-H, Fan B, Rothschild MF, Hu Z-L, Li K, Zhao S-H.  2007.  MiRFinder: an improved approach and software implementation for genome-wide fast microRNA precursor scans.. BMC Bioinformatics. 8:341.
Megraw M, Sethupathy P, Corda B, Hatzigeorgiou AG.  2007.  miRGen: a database for the study of animal microRNA genomic organization and function.. Nucleic Acids Res. 35(Database issue):D149-55.
Chiromatzo AO, Oliveira TYK, Pereira G, Costa AY, Montesco CAE, Gras DE, Yosetake F, Vilar JB, Cervato M, Prado PRR et al..  2007.  miRNApath: a database of miRNAs, target genes and metabolic pathways.. Genet Mol Res. 6(4):859-65.
Molnár A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC.  2007.  miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii.. Nature. 447(7148):1126-9.
Terai G, Komori T, Asai K, Kin T.  2007.  miRRim: a novel system to find conserved miRNAs with high sensitivity and specificity.. RNA. 13(12):2081-90.
Ladunga I.  2007.  More complete gene silencing by fewer siRNAs: transparent optimized design and biophysical signature.. Nucleic Acids Res. 35(2):433-40.
Yousef M, Jung S, Kossenkov AV, Showe LC, Showe MK.  2007.  Naïve Bayes for microRNA target predictions--machine learning for microRNA targets.. Bioinformatics. 23(22):2987-92.

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