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Found 1346 results
2008
Tyagi S, Vaz C, Gupta V, Bhatia R, Maheshwari S, Srinivasan A, Bhattacharya A.  2008.  CID-miRNA: a web server for prediction of novel miRNA precursors in human genome.. Biochem Biophys Res Commun. 372(4):831-4.
Maselli V, Di Bernardo D, Banfi S.  2008.  CoGemiR: a comparative genomics microRNA database.. BMC Genomics. 9:457.
Morin RD, Aksay G, Dolgosheina E, H Ebhardt A, Magrini V, Mardis ER, S Sahinalp C, Unrau PJ.  2008.  Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa.. Genome Res. 18(4):571-84.
Berninger P, Gaidatzis D, van Nimwegen E, Zavolan M.  2008.  Computational analysis of small RNA cloning data.. Methods. 44(1):13-21.
Zhao Y, Li H, Hou Y, Cha L, Cao Y, Wang L, Ying X, Li W.  2008.  Construction of two mathematical models for prediction of bacterial sRNA targets.. Biochem Biophys Res Commun. 372(2):346-50.
Friedländer MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N.  2008.  Discovering microRNAs from deep sequencing data using miRDeep.. Nat Biotechnol. 26(4):407-15.
An J, Chen Y-PPhoebe.  2008.  Finding edging genes from microarray data.. J Biotechnol. 135(3):233-40.
Xu X, Zhao Y, Simon R.  2008.  Gene Set Expression Comparison kit for BRB-ArrayTools.. Bioinformatics. 24(1):137-9.
Ossowski S, Schwab R, Weigel D.  2008.  Gene silencing in plants using artificial microRNAs and other small RNAs.. Plant J. 53(4):674-90.
Reimand J, Tooming L, Peterson H, Adler P, Vilo J.  2008.  GraphWeb: mining heterogeneous biological networks for gene modules with functional significance.. Nucleic Acids Res. 36(Web Server issue):W452-9.
Zhang R, Lin Y, Zhang C-T.  2008.  Greglist: a database listing potential G-quadruplex regulated genes.. Nucleic Acids Res. 36(Database issue):D372-6.
Livny J, Teonadi H, Livny M, Waldor MK.  2008.  High-throughput, kingdom-wide prediction and annotation of bacterial non-coding RNAs.. PLoS One. 3(9):e3197.
Wang X, Gu J, Zhang MQ, Li Y.  2008.  Identification of phylogenetically conserved microRNA cis-regulatory elements across 12 Drosophila species.. Bioinformatics. 24(2):165-71.
Owczarzy R, Tataurov AV, Wu Y, Manthey JA, McQuisten KA, Almabrazi HG, Pedersen KF, Lin Y, Garretson J, McEntaggart NO et al..  2008.  IDT SciTools: a suite for analysis and design of nucleic acid oligomers.. Nucleic Acids Res. 36(Web Server issue):W163-9.
Tafer H, Ameres SL, Obernosterer G, Gebeshuber CA, Schroeder R, Martinez J, Hofacker IL.  2008.  The impact of target site accessibility on the design of effective siRNAs.. Nat Biotechnol. 26(5):578-83.
Busch A, Richter AS, Backofen R.  2008.  IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions.. Bioinformatics. 24(24):2849-56.
Reumers J, Conde L, Medina I, Maurer-Stroh S, Van Durme J, Dopazo J, Rousseau F, Schymkowitz J.  2008.  Joint annotation of coding and non-coding single nucleotide polymorphisms and mutations in the SNPeffect and PupaSuite databases.. Nucleic Acids Res. 36(Database issue):D825-9.
Brazas MD, Fox JA, Brown T, McMillan S, Ouellette BFFrancis.  2008.  Keeping pace with the data: 2008 update on the Bioinformatics Links Directory.. Nucleic Acids Res. 36(Web Server issue):W2-4.
Noirot C, Gaspin C, Schiex T, Gouzy J.  2008.  LeARN: a platform for detecting, clustering and annotating non-coding RNAs.. BMC Bioinformatics. 9:21.
Rambaldi D, Giorgi FM, Capuani F, Ciliberto A, Ciccarelli FD.  2008.  Low duplicability and network fragility of cancer genes.. Trends Genet. 24(9):427-30.
Lawrence CJ, Harper LC, Schaeffer ML, Sen TZ, Seigfried TE, Campbell DA.  2008.  MaizeGDB: The maize model organism database for basic, translational, and applied research.. Int J Plant Genomics. 2008:496957.
Li H, Ruan J, Durbin R.  2008.  Mapping short DNA sequencing reads and calling variants using mapping quality scores.. Genome Res. 18(11):1851-8.
Chi B, deLeeuw RJ, Coe BP, Ng RT, MacAulay C, Lam WL.  2008.  MD-SeeGH: a platform for integrative analysis of multi-dimensional genomic data.. BMC Bioinformatics. 9:243.
Le Béchec A, Zindy P, Sierocinski T, Petritis D, Bihouée A, Le Meur N, Léger J, Théret N.  2008.  M@IA: a modular open-source application for microarray workflow and integrative datamining.. In Silico Biol. 8(1):63-9.
Xu Y, Zhou X, Zhang W.  2008.  MicroRNA prediction with a novel ranking algorithm based on random walks.. Bioinformatics. 24(13):i50-8.

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