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Found 1346 results
2006
Dash R, Moharana SS, A Reddy S, G Sastry M, G Sastry N.  2006.  DSTHO: database of siRNAs targeted at human oncogenes: a statistical analysis.. Int J Biol Macromol. 38(1):65-9.
H Ebhardt A, Wiese KC, Unrau PJ.  2006.  Ebbie: automated analysis and storage of small RNA cloning data using a dynamic web server.. BMC Bioinformatics. 7:185.
Holen T.  2006.  Efficient prediction of siRNAs with siRNArules 1.0: an open-source JAVA approach to siRNA algorithms.. RNA. 12(9):1620-5.
Sims D, Bursteinas B, Gao Q, Zvelebil M, Baum B.  2006.  FLIGHT: database and tools for the integration and cross-correlation of large-scale RNAi phenotypic datasets.. Nucleic Acids Res. 34(Database issue):D479-83.
Flockhart I, Booker M, Kiger A, Boutros M, Armknecht S, Ramadan N, Richardson K, Xu A, Perrimon N, Mathey-Prevot B.  2006.  FlyRNAi: the Drosophila RNAi screening center database.. Nucleic Acids Res. 34(Database issue):D489-94.
Lall S, Grün D, Krek A, Chen K, Wang Y-L, Dewey CN, Sood P, Colombo T, Bray N, MacMenamin P et al..  2006.  A genome-wide map of conserved microRNA targets in C. elegans.. Curr Biol. 16(5):460-71.
Gerlach W, Giegerich R.  2006.  GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing.. Bioinformatics. 22(6):762-4.
Hertel J, Stadler PF.  2006.  Hairpins in a Haystack: recognizing microRNA precursors in comparative genomics data.. Bioinformatics. 22(14):e197-202.
Schwab R, Ossowski S, Riester M, Warthmann N, Weigel D.  2006.  Highly specific gene silencing by artificial microRNAs in Arabidopsis.. Plant Cell. 18(5):1121-33.
Dezulian T, Remmert M, Palatnik JF, Weigel D, Huson DH.  2006.  Identification of plant microRNA homologs.. Bioinformatics. 22(3):359-60.
Thadani R, Tammi MT.  2006.  MicroTar: predicting microRNA targets from RNA duplexes.. BMC Bioinformatics. 7 Suppl 5:S20.
Hermida L, Schaad O, Demougin P, Descombes P, Primig M.  2006.  MIMAS: an innovative tool for network-based high density oligonucleotide microarray data management and annotation.. BMC Bioinformatics. 7:190.
Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ.  2006.  miRBase: microRNA sequences, targets and gene nomenclature.. Nucleic Acids Res. 34(Database issue):D140-4.
Griffiths-Jones S.  2006.  miRBase: the microRNA sequence database.. Methods Mol Biol. 342:129-38.
Hsu PWC, Da Huang H-, Da Hsu S-, Lin L-Z, Tsou A-P, Tseng C-P, Stadler PF, Washietl S, Hofacker IL.  2006.  miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes.. Nucleic Acids Res. 34(Database issue):D135-9.
Kim S-K, Nam J-W, Rhee J-K, Lee W-J, Zhang B-T.  2006.  miTarget: microRNA target gene prediction using a support vector machine.. BMC Bioinformatics. 7:411.
Wu T, Wang J, Liu C, Zhang Y, Shi B, Zhu X, Zhang Z, Skogerbø G, Chen L, Lu H et al..  2006.  NPInter: the noncoding RNAs and protein related biomacromolecules interaction database.. Nucleic Acids Res. 34(Database issue):D150-2.
Schretter C, Milinkovitch MC.  2006.  OligoFaktory: a visual tool for interactive oligonucleotide design.. Bioinformatics. 22(1):115-6.
Mamidipalli SR, Palakal M, Li S.  2006.  OligoMatcher: analysis and selection of specific oligonucleotide sequences for gene silencing by antisense or siRNA.. Appl Bioinformatics. 5(2):121-4.
Miranda KC, Huynh T, Tay Y, Ang Y-S, Tam W-L, Thomson AM, Lim B, Rigoutsos I.  2006.  A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes.. Cell. 126(6):1203-17.
Nakano M, Nobuta K, Vemaraju K, Tej SSingh, Skogen JW, Meyers BC.  2006.  Plant MPSS databases: signature-based transcriptional resources for analyses of mRNA and small RNA.. Nucleic Acids Res. 34(Database issue):D731-5.
Georges M, Clop A, Marcq F, Takeda H, Pirottin D, Hiard S, Tordoir X, Caiment F, Meish F, Bibé B et al..  2006.  Polymorphic microRNA-target interactions: a novel source of phenotypic variation.. Cold Spring Harb Symp Quant Biol. 71:343-50.
Nam J-W, Kim J, Kim S-K, Zhang B-T.  2006.  ProMiR II: a web server for the probabilistic prediction of clustered, nonclustered, conserved and nonconserved microRNAs.. Nucleic Acids Res. 34(Web Server issue):W455-8.
Shu W, Bo X, Liu R, Zhao D, Zheng Z, Wang S.  2006.  RDMAS: a web server for RNA deleterious mutation analysis.. BMC Bioinformatics. 7:404.
Huang H-Y, Chien C-H, Jen K-H, Da Huang H-.  2006.  RegRNA: an integrated web server for identifying regulatory RNA motifs and elements.. Nucleic Acids Res. 34(Web Server issue):W429-34.

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