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Found 1346 results
2009
Maragkakis M, Alexiou P, Papadopoulos GL, Reczko M, Dalamagas T, Giannopoulos G, Goumas G, Koukis E, Kourtis K, Simossis VA et al..  2009.  Accurate microRNA target prediction correlates with protein repression levels.. BMC Bioinformatics. 10:295.
Peng Z-yu, Zhou X, Li L, Yu X, Li H, Jiang Z, Cao G, Bai M, Wang X, Jiang C et al..  2009.  Arabidopsis Hormone Database: a comprehensive genetic and phenotypic information database for plant hormone research in Arabidopsis.. Nucleic Acids Res. 37(Database issue):D975-82.
Bülow L, Engelmann S, Schindler M, Hehl R.  2009.  AthaMap, integrating transcriptional and post-transcriptional data.. Nucleic Acids Res. 37(Database issue):D983-6.
Matuszek G, Talebizadeh Z.  2009.  Autism Genetic Database (AGD): a comprehensive database including autism susceptibility gene-CNVs integrated with known noncoding RNAs and fragile sites.. BMC Med Genet. 10:102.
Ying X, Kim YJung, Mao Y, Liu M, Hou Y, Li H, Wang X, Zhao Y, Zhao D, Patel JM et al..  2009.  BatchGenAna: a batch platform for large-scale genomic analysis of mammalian small RNAs.. Bioinformation. 3(8):346-8.
Wang D, Lu M, Miao J, Li T, Wang E, Cui Q.  2009.  Cepred: predicting the co-expression patterns of the human intronic microRNAs with their host genes.. PLoS One. 4(2):e4421.
Addo-Quaye C, Miller W, Axtell MJ.  2009.  CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets.. Bioinformatics. 25(1):130-1.
Lu L, Li J.  2009.  A combinatorial approach to determine the context-dependent role in transcriptional and posttranscriptional regulation in Arabidopsis thaliana.. BMC Syst Biol. 3:43.
Wu X, Watson M.  2009.  CORNA: testing gene lists for regulation by microRNAs.. Bioinformatics. 25(6):832-3.
Mendes ND, Freitas AT, Sagot M-F.  2009.  Current tools for the identification of miRNA genes and their targets.. Nucleic Acids Res. 37(8):2419-33.
Ogorevc J, Kunej T, Razpet A, Dovc P.  2009.  Database of cattle candidate genes and genetic markers for milk production and mastitis.. Anim Genet. 40(6):832-51.
Papadopoulos GL, Reczko M, Simossis VA, Sethupathy P, Hatzigeorgiou AG.  2009.  The database of experimentally supported targets: a functional update of TarBase.. Nucleic Acids Res. 37(Database issue):D155-8.
Hariharan M, Scaria V, Brahmachari SK.  2009.  dbSMR: a novel resource of genome-wide SNPs affecting microRNA mediated regulation.. BMC Bioinformatics. 10:108.
Huttenhower C, K Mutungu T, Indik N, Yang W, Schroeder M, Forman JJ, Troyanskaya OG, Coller HA.  2009.  Detailing regulatory networks through large scale data integration.. Bioinformatics. 25(24):3267-74.
Maragkakis M, Reczko M, Simossis VA, Alexiou P, Papadopoulos GL, Dalamagas T, Giannopoulos G, Goumas G, Koukis E, Kourtis K et al..  2009.  DIANA-microT web server: elucidating microRNA functions through target prediction.. Nucleic Acids Res. 37(Web Server issue):W273-6.
Papadopoulos GL, Alexiou P, Maragkakis M, Reczko M, Hatzigeorgiou AG.  2009.  DIANA-mirPath: Integrating human and mouse microRNAs in pathways.. Bioinformatics. 25(15):1991-3.
Brazas MD, Yamada JTadashi, Ouellette BFFrancis.  2009.  Evolution in bioinformatic resources: 2009 update on the Bioinformatics Links Directory.. Nucleic Acids Res. 37(Web Server issue):W3-5.
Shu W, Ni M, Bo X, Zheng Z, Wang S.  2009.  EvoRSR: an integrated system for exploring evolution of RNA structural robustness.. BMC Bioinformatics. 10:249.
Mathivanan S, Simpson RJ.  2009.  ExoCarta: A compendium of exosomal proteins and RNA.. Proteomics. 9(21):4997-5000.
Severin J, Waterhouse AM, Kawaji H, Lassmann T, van Nimwegen E, Balwierz PJ, de Hoon MJl, Hume DA, Carninci P, Hayashizaki Y et al..  2009.  FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions.. Genome Biol. 10(4):R39.
Li H, Durbin R.  2009.  Fast and accurate short read alignment with Burrows-Wheeler transform.. Bioinformatics. 25(14):1754-60.
Hoffmann S, Otto C, Kurtz S, Sharma CM, Khaitovich P, Vogel J, Stadler PF, Hackermüller J.  2009.  Fast mapping of short sequences with mismatches, insertions and deletions using index structures.. PLoS Comput Biol. 5(9):e1000502.
Mituyama T, Yamada K, Hattori E, Okida H, Ono Y, Terai G, Yoshizawa A, Komori T, Asai K.  2009.  The Functional RNA Database 3.0: databases to support mining and annotation of functional RNAs.. Nucleic Acids Res. 37(Database issue):D89-92.
Nogales-Cadenas R, Carmona-Saez P, Vazquez M, Vicente C, Yang X, Tirado F, Carazo JMaría, Pascual-Montano A.  2009.  GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information.. Nucleic Acids Res. 37(Web Server issue):W317-22.
Antonov AV, Dietmann S, Wong P, Lutter D, Mewes HW.  2009.  GeneSet2miRNA: finding the signature of cooperative miRNA activities in the gene lists.. Nucleic Acids Res. 37(Web Server issue):W323-8.

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