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Found 1346 results
2008
Gong W, Ren Y, Zhou H, Wang Y, Kang S, Li T.  2008.  siDRM: an effective and generally applicable online siRNA design tool.. Bioinformatics. 24(20):2405-6.
Chalk AM, Sonnhammer ELL.  2008.  siRNA specificity searching incorporating mismatch tolerance data.. Bioinformatics. 24(10):1316-7.
Alsheddi T, Vasin L, Meduri R, Randhawa M, Glazko G, Baranova A.  2008.  [siRNAs with high specificity to the target: a systematic design by CRM algorithm].. Mol Biol (Mosk). 42(1):163-71.
Itaya A, Bundschuh R, Archual AJ, Joung J-G, Fei Z, Dai X, Zhao PX, Tang Y, Nelson RS, Ding B.  2008.  Small RNAs in tomato fruit and leaf development.. Biochim Biophys Acta. 1779(2):99-107.
Hertel J, Hofacker IL, Stadler PF.  2008.  SnoReport: computational identification of snoRNAs with unknown targets.. Bioinformatics. 24(2):158-64.
Li R, Li Y, Kristiansen K, Wang J.  2008.  SOAP: short oligonucleotide alignment program.. Bioinformatics. 24(5):713-4.
Tjaden B.  2008.  TargetRNA: a tool for predicting targets of small RNA action in bacteria.. Nucleic Acids Res. 36(Web Server issue):W109-13.
Moxon S, Schwach F, Dalmay T, Maclean D, Studholme DJ, Moulton V.  2008.  A toolkit for analysing large-scale plant small RNA datasets.. Bioinformatics. 24(19):2252-3.
Levy A, Sela N, Ast G.  2008.  TranspoGene and microTranspoGene: transposed elements influence on the transcriptome of seven vertebrates and invertebrates.. Nucleic Acids Res. 36(Database issue):D47-52.
Seemann SE, Gorodkin J, Backofen R.  2008.  Unifying evolutionary and thermodynamic information for RNA folding of multiple alignments.. Nucleic Acids Res. 36(20):6355-62.
Backman TWH, Sullivan CM, Cumbie JS, Miller ZA, Chapman EJ, Fahlgren N, Givan SA, Carrington JC, Kasschau KD.  2008.  Update of ASRP: the Arabidopsis Small RNA Project database.. Nucleic Acids Res. 36(Database issue):D982-5.
Ford LP, Cheng A.  2008.  Using synthetic precursor and inhibitor miRNAs to understand miRNA function.. Methods Mol Biol. 419:289-301.
Mangone M, MacMenamin P, Zegar C, Piano F, Gunsalus KC.  2008.  UTRome.org: a platform for 3'UTR biology in C. elegans.. Nucleic Acids Res. 36(Database issue):D57-62.
Gruber AR, Lorenz R, Bernhart SH, Neuböck R, Hofacker IL.  2008.  The Vienna RNA websuite.. Nucleic Acids Res. 36(Web Server issue):W70-4.
Li S-C, Shiau C-K, Lin W-C.  2008.  Vir-Mir db: prediction of viral microRNA candidate hairpins.. Nucleic Acids Res. 36(Database issue):D184-9.
Price TS, Baggs JE, Curtis AM, Fitzgerald GA, Hogenesch JB.  2008.  WAVECLOCK: wavelet analysis of circadian oscillation.. Bioinformatics. 24(23):2794-5.
Von Stetina SE, Mango SE.  2008.  Wormnet: a crystal ball for Caenorhabditis elegans.. Genome Biol. 9(6):226.
Vareková RSvobodová, Bradác I, Plchút M, Skrdla M, Wacenovsky M, Mahr H, Mayer G, Tanner H, Brugger H, Withalm J et al..  2008.  www.rnaworkbench.com: A new program for analyzing RNA interference.. Comput Methods Programs Biomed. 90(1):89-94.
2007
Fox JA, McMillan S, Ouellette BFFrancis.  2007.  Conducting research on the web: 2007 update for the bioinformatics links directory.. Nucleic Acids Res. 35(Web Server issue):W3-5.
Johnson C, Bowman L, Adai AT, Vance V, Sundaresan V.  2007.  CSRDB: a small RNA integrated database and browser resource for cereals.. Nucleic Acids Res. 35(Database issue):D829-33.
Ng KLoong Stan, Mishra SK.  2007.  De novo SVM classification of precursor microRNAs from genomic pseudo hairpins using global and intrinsic folding measures.. Bioinformatics. 23(11):1321-30.
Nielsen CB, Shomron N, Sandberg R, Hornstein E, Kitzman J, Burge CB.  2007.  Determinants of targeting by endogenous and exogenous microRNAs and siRNAs.. RNA. 13(11):1894-910.
Shah AR, Singhal M, Klicker KR, Stephan EG, H Wiley S, Waters KM.  2007.  Enabling high-throughput data management for systems biology: the Bioinformatics Resource Manager.. Bioinformatics. 23(7):906-9.
Nobuta K, Venu RC, Lu C, Beló A, Vemaraju K, Kulkarni K, Wang W, Pillay M, Green PJ, Wang G-liang et al..  2007.  An expression atlas of rice mRNAs and small RNAs.. Nat Biotechnol. 25(4):473-7.
Al-Shahrour F, Minguez P, Tárraga J, Medina I, Alloza E, Montaner D, Dopazo J.  2007.  FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments.. Nucleic Acids Res. 35(Web Server issue):W91-6.

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