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Found 1346 results
2007
de la Grange P, Dutertre M, Correa M, Auboeuf D.  2007.  A new advance in alternative splicing databases: from catalogue to detailed analysis of regulation of expression and function of human alternative splicing variants.. BMC Bioinformatics. 8:180.
Szymanski M, Erdmann VA, Barciszewski J.  2007.  Noncoding RNAs database (ncRNAdb).. Nucleic Acids Res. 35(Database issue):D162-4.
Bao L, Zhou M, Wu L, Lu L, Goldowitz D, Williams RW, Cui Y.  2007.  PolymiRTS Database: linking polymorphisms in microRNA target sites with complex traits.. Nucleic Acids Res. 35(Database issue):D51-4.
Helvik SA, Snøve O, Saetrom P.  2007.  Reliable prediction of Drosha processing sites improves microRNA gene prediction.. Bioinformatics. 23(2):142-9.
Jiang P, Wu H, Da Y, Sang F, Wei J, Sun X, Lu Z.  2007.  RFRCDB-siRNA: improved design of siRNAs by random forest regression model coupled with database searching.. Comput Methods Programs Biomed. 87(3):230-8.
Pang KC, Stephen S, Dinger ME, Engström PG, Lenhard B, Mattick JS.  2007.  RNAdb 2.0--an expanded database of mammalian non-coding RNAs.. Nucleic Acids Res. 35(Database issue):D178-82.
Gruber AR, Neuböck R, Hofacker IL, Washietl S.  2007.  The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures.. Nucleic Acids Res. 35(Web Server issue):W335-8.
Ahmed FE.  2007.  Role of miRNA in carcinogenesis and biomarker selection: a methodological view.. Expert Rev Mol Diagn. 7(5):569-603.
Kertesz M, Iovino N, Unnerstall U, Gaul U, Segal E.  2007.  The role of site accessibility in microRNA target recognition.. Nat Genet. 39(10):1278-84.
Xue C, Liu G-P.  2007.  RScan: fast searching structural similarities for structured RNAs in large databases.. BMC Genomics. 8:257.
Shah JK, Garner HR, White MA, Shames DS, Minna JD.  2007.  sIR: siRNA Information Resource, a web-based tool for siRNA sequence design and analysis and an open access siRNA database.. BMC Bioinformatics. 8:178.
Huang JC, Babak T, Corson TW, Chua G, Khan S, Gallie BL, Hughes TR, Blencowe BJ, Frey BJ, Morris QD.  2007.  Using expression profiling data to identify human microRNA targets.. Nat Methods. 4(12):1045-9.
Hsu PWei-Che, Lin L-Z, Da Hsu S-, Hsu JBo-Kai, Da Huang H-.  2007.  ViTa: prediction of host microRNAs targets on viruses.. Nucleic Acids Res. 35(Database issue):D381-5.
2006
Vert J-P, Foveau N, Lajaunie C, Vandenbrouck Y.  2006.  An accurate and interpretable model for siRNA efficacy prediction.. BMC Bioinformatics. 7:520.
Nam D, Kim S-B, Kim S-K, Yang S, Kim S-Y, Chu I-S.  2006.  ADGO: analysis of differentially expressed gene sets using composite GO annotation.. Bioinformatics. 22(18):2249-53.
Boutros M, Brás LP, Huber W.  2006.  Analysis of cell-based RNAi screens.. Genome Biol. 7(7):R66.
Shahi P, Loukianiouk S, Bohne-Lang A, Kenzelmann M, Küffer S, Maertens S, Eils R, Gröne H-J, Gretz N, Brors B.  2006.  Argonaute--a database for gene regulation by mammalian microRNAs.. Nucleic Acids Res. 34(Database issue):D115-8.
Dror O, Nussinov R, Wolfson HJ.  2006.  The ARTS web server for aligning RNA tertiary structures.. Nucleic Acids Res. 34(Web Server issue):W412-5.
Yao Z, Weinberg Z, Ruzzo WL.  2006.  CMfinder--a covariance model based RNA motif finding algorithm.. Bioinformatics. 22(4):445-52.
Yousef M, Nebozhyn M, Shatkay H, Kanterakis S, Showe LC, Showe MK.  2006.  Combining multi-species genomic data for microRNA identification using a Naive Bayes classifier.. Bioinformatics. 22(11):1325-34.
Jones NC, Pevzner PA.  2006.  Comparative genomics reveals unusually long motifs in mammalian genomes.. Bioinformatics. 22(14):e236-42.
Fox JA, McMillan S, Ouellette BFFrancis.  2006.  A compilation of molecular biology web servers: 2006 update on the Bioinformatics Links Directory.. Nucleic Acids Res. 34(Web Server issue):W3-5.
Zhang B, Pan X, Wang Q, Cobb GP, Anderson TA.  2006.  Computational identification of microRNAs and their targets.. Comput Biol Chem. 30(6):395-407.
Dezulian T, Schaefer M, Wiese R, Weigel D, Huson DH.  2006.  CrossLink: visualization and exploration of sequence relationships between (micro) RNAs.. Nucleic Acids Res. 34(Web Server issue):W400-4.
Liu C-C, Lin C-C, Chen W-SE, Chen H-Y, Chang P-C, Chen JJW, Yang P-C.  2006.  CRSD: a comprehensive web server for composite regulatory signature discovery.. Nucleic Acids Res. 34(Web Server issue):W571-7.

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