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Found 1346 results
2009
Plake C, Royer L, Winnenburg R, Hakenberg J, Schroeder M.  2009.  GoGene: gene annotation in the fast lane.. Nucleic Acids Res. 37(Web Server issue):W300-4.
Kadri S, Hinman V, Benos PV.  2009.  HHMMiR: efficient de novo prediction of microRNAs using hierarchical hidden Markov models.. BMC Bioinformatics. 10 Suppl 1:S35.
Xiao J, Li Y, Wang K, Wen Z, Li M, Zhang L, Guang X.  2009.  In silico method for systematic analysis of feature importance in microRNA-mRNA interactions.. BMC Bioinformatics. 10:427.
Yang X, Huang Y, Chen JL, Xie J, Sun X, Lussier YA.  2009.  Mechanism-anchored profiling derived from epigenetic networks predicts outcome in acute lymphoblastic leukemia.. BMC Bioinformatics. 10 Suppl 9:S6.
Mhuantong W, Wichadakul D.  2009.  MicroPC (microPC): A comprehensive resource for predicting and comparing plant microRNAs.. BMC Genomics. 10:366.
Batuwita R, Palade V.  2009.  microPred: effective classification of pre-miRNAs for human miRNA gene prediction.. Bioinformatics. 25(8):989-95.
Nam S, Li M, Choi K, Balch C, Kim S, Nephew KP.  2009.  MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression.. Nucleic Acids Res. 37(Web Server issue):W356-62.
Gattiker A, Hermida L, Liechti R, Xenarios I, Collin O, Rougemont J, Primig M.  2009.  MIMAS 3.0 is a Multiomics Information Management and Annotation System.. BMC Bioinformatics. 10:151.
Jiang Q, Wang Y, Hao Y, Juan L, Teng M, Zhang X, Li M, Wang G, Liu Y.  2009.  miR2Disease: a manually curated database for microRNA deregulation in human disease.. Nucleic Acids Res. 37(Database issue):D98-104.
Hackenberg M, Sturm M, Langenberger D, Falcón-Pérez JManuel, Aransay AM.  2009.  miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments.. Nucleic Acids Res. 37(Web Server issue):W68-76.
Xiao F, Zuo Z, Cai G, Kang S, Gao X, Li T.  2009.  miRecords: an integrated resource for microRNA-target interactions.. Nucleic Acids Res. 37(Database issue):D105-10.
Wang W-C, Lin F-M, Chang W-C, Lin K-Y, Da Huang H-, Lin N-S.  2009.  miRExpress: analyzing high-throughput sequencing data for profiling microRNA expression.. BMC Bioinformatics. 10:328.
Laganà A, Forte S, Giudice A, Arena MR, Puglisi PL, Giugno R, Pulvirenti A, Shasha D, Ferro A.  2009.  miRò: a miRNA knowledge base.. Database (Oxford). 2009:bap008.
Gerlach D, Kriventseva EV, Rahman N, Vejnar CE, Zdobnov EM.  2009.  miROrtho: computational survey of microRNA genes.. Nucleic Acids Res. 37(Database issue):D111-7.
Hausser J, Berninger P, Rodak C, Jantscher Y, Wirth S, Zavolan M.  2009.  MirZ: an integrated microRNA expression atlas and target prediction resource.. Nucleic Acids Res. 37(Web Server issue):W266-72.
Risso D, Massa MSofia, Chiogna M, Romualdi C.  2009.  A modified LOESS normalization applied to microRNA arrays: a comparative evaluation.. Bioinformatics. 25(20):2685-91.
Friedman RC, Farh KKai-How, Burge CB, Bartel DP.  2009.  Most mammalian mRNAs are conserved targets of microRNAs.. Genome Res. 19(1):92-105.
Ng K-L, Liu H-C, Lee S-C.  2009.  ncRNAppi--a tool for identifying disease-related miRNA and siRNA targeting pathways.. Bioinformatics. 25(23):3199-201.
Navon R, Wang H, Steinfeld I, Tsalenko A, Ben-Dor A, Yakhini Z.  2009.  Novel rank-based statistical methods reveal microRNAs with differential expression in multiple cancer types.. PLoS One. 4(11):e8003.
Lazzari B, Caprera A, Cestaro A, Merelli I, Del Corvo M, Fontana P, Milanesi L, Velasco R, Stella A.  2009.  Ontology-oriented retrieval of putative microRNAs in Vitis vinifera via GrapeMiRNA: a web database of de novo predicted grape microRNAs.. BMC Plant Biol. 9:82.
Chitsaz H, Salari R, S Sahinalp C, Backofen R.  2009.  A partition function algorithm for interacting nucleic acid strands.. Bioinformatics. 25(12):i365-73.
Campagna D, Albiero A, Bilardi A, Caniato E, Forcato C, Manavski S, Vitulo N, Valle G.  2009.  PASS: a program to align short sequences.. Bioinformatics. 25(7):967-8.
Yang JOk, Kim W-Y, Jeong S-Y, Oh J-H, Jho S, Bhak J, Kim N-S.  2009.  PDbase: a database of Parkinson's disease-related genes and genetic variation using substantia nigra ESTs.. BMC Genomics. 10 Suppl 3:S32.
Chen Y, Souaiaia T, Chen T.  2009.  PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds.. Bioinformatics. 25(19):2514-21.
Ahmed F, Ansari HRahman, Raghava GPS.  2009.  Prediction of guide strand of microRNAs from its sequence and secondary structure.. BMC Bioinformatics. 10:105.

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