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Found 1346 results
2015
Thang BNgoc, Ho TBao, Kanda T.  2015.  A semi-supervised tensor regression model for siRNA efficacy prediction.. BMC Bioinformatics. 16:80.
Preusse M, Marr C, Saunders S, Maticzka D, Lickert H, Backofen R, Theis F.  2015.  SimiRa: A tool to identify coregulation between microRNAs and RNA-binding proteins.. RNA Biol. 12(9):998-1009.
Milholland B, Gombar S, Suh Y.  2015.  SMiRK: an Automated Pipeline for miRNA Analysis.. Source J Genom. 1(1)
Rueda A, Barturen G, Lebrón R, Gómez-Martín C, Alganza Á, Oliver JL, Hackenberg M.  2015.  sRNAtoolbox: an integrated collection of small RNA research tools.. Nucleic Acids Res. 43(W1):W467-73.
Liu S, Li J-H, Wu J, Zhou K-R, Zhou H, Yang J-H, Qu L-H.  2015.  StarScan: a web server for scanning small RNA targets from degradome sequencing data.. Nucleic Acids Res. 43(W1):W480-6.
Maxwell EK, Campbell JD, Spira A, Baxevanis AD.  2015.  SubmiRine: assessing variants in microRNA targets using clinical genomic data sets.. Nucleic Acids Res. 43(8):3886-98.
Feng L, Xu Y, Zhang Y, Sun Z, Han J, Zhang C, Yang H, Shang D, Su F, Shi X et al..  2015.  Subpathway-GMir: identifying miRNA-mediated metabolic subpathways by integrating condition-specific genes, microRNAs, and pathway topologies.. Oncotarget. 6(36):39151-64.
Chou M-T, Han BW, Hsiao C-P, Zamore PD, Weng Z, Hung J-H.  2015.  Tailor: a computational framework for detecting non-templated tailing of small silencing RNAs.. Nucleic Acids Res. 43(17):e109.
Hamed M, Spaniol C, Nazarieh M, Helms V.  2015.  TFmiR: a web server for constructing and analyzing disease-specific transcription factor and miRNA co-regulatory networks.. Nucleic Acids Res. 43(W1):W283-8.
Wang S, Li W, Lian B, Liu X, Zhang Y, Dai E, Yu X, Meng F, Jiang W, Li X.  2015.  TMREC: A Database of Transcription Factor and MiRNA Regulatory Cascades in Human Diseases.. PLoS One. 10(5):e0125222.
Svoboda P.  2015.  A toolbox for miRNA analysis.. FEBS Lett. 589(14):1694-701.
Schimek MG, Budinská E, Kugler KG, Švendová V, Ding J, Lin S.  2015.  TopKLists: a comprehensive R package for statistical inference, stochastic aggregation, and visualization of multiple omics ranked lists.. Stat Appl Genet Mol Biol. 14(3):311-6.
Hsieh W-T, Tzeng K-R, Ciou J-S, Tsai JJp, Kurubanjerdjit N, Huang C-H, Ng K-L.  2015.  Transcription factor and microRNA-regulated network motifs for cancer and signal transduction networks.. BMC Syst Biol. 9 Suppl 1:S5.
Zhu Y, Richardson JE, Hale P, Baldarelli RM, Reed DJ, Recla JM, Sinclair R, Reddy TBK, Bult CJ.  2015.  A unified gene catalog for the laboratory mouse reference genome.. Mamm Genome. 26(7-8):295-304.
Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E et al..  2015.  A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome.. Annu Rev Genet. 49:213-42.
Gong J, Liu C, Liu W, Wu Y, Ma Z, Chen H, Guo A-Y.  2015.  An update of miRNASNP database for better SNP selection by GWAS data, miRNA expression and online tools.. Database (Oxford). 2015:bav029.
Volders P-J, Verheggen K, Menschaert G, Vandepoele K, Martens L, Vandesompele J, Mestdagh P.  2015.  An update on LNCipedia: a database for annotated human lncRNA sequences.. Nucleic Acids Res. 43(Database issue):D174-80.
Volders PJ, Verheggen K, Menschaert G, Vandepoele K, Martens L, Vandesompele J, Mestdagh P.  2015.  An update on LNCipedia: a database for annotated human lncRNA sequences.. Nucleic Acids Res. 43(8):4363-4.
Gruber AR, Bernhart SH, Lorenz R.  2015.  The ViennaRNA web services.. Methods Mol Biol. 1269:307-26.
Huang K-Y, Lee T-Y, Teng Y-C, Chang T-H.  2015.  ViralmiR: a support-vector-machine-based method for predicting viral microRNA precursors.. BMC Bioinformatics. 16 Suppl 1:S9.
Li Y, Wang C, Miao Z, Bi X, Wu D, Jin N, Wang L, Wu H, Qian K, Li C et al..  2015.  ViRBase: a resource for virus-host ncRNA-associated interactions.. Nucleic Acids Res. 43(Database issue):D578-82.
Vorozheykin PS, Titov II.  2015.  [Web server for prediction of miRNAs and their precursors and binding sites].. Mol Biol (Mosk). 49(5):846-53.
J Karpinka B, Fortriede JD, Burns KA, James-Zorn C, Ponferrada VG, Lee J, Karimi K, Zorn AM, Vize PD.  2015.  Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes.. Nucleic Acids Res. 43(Database issue):D756-63.
Kleftogiannis D, Theofilatos K, Likothanassis S, Mavroudi S.  2015.  YamiPred: A Novel Evolutionary Method for Predicting Pre-miRNAs and Selecting Relevant Features.. IEEE/ACM Trans Comput Biol Bioinform. 12(5):1183-92.
Cheng W-C, Chung I-F, Tsai C-F, Huang T-S, Chen C-Y, Wang S-C, Chang T-Y, Sun H-J, Chao JYung-Chuan, Cheng C-C et al..  2015.  YM500v2: a small RNA sequencing (smRNA-seq) database for human cancer miRNome research.. Nucleic Acids Res. 43(Database issue):D862-7.

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