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Found 1346 results
2015
Pundhir S, Gorodkin J.  2015.  Differential and coherent processing patterns from small RNAs.. Sci Rep. 5:12062.
Ha MJin, Baladandayuthapani V, Do K-A.  2015.  DINGO: differential network analysis in genomics.. Bioinformatics. 31(21):3413-20.
Nalluri JJ, Kamapantula BK, Barh D, Jain N, Bhattacharya A, de Almeida SSilva, Ramos RThiago Juc, Silva A, Azevedo V, Ghosh P.  2015.  DISMIRA: Prioritization of disease candidates in miRNA-disease associations based on maximum weighted matching inference model and motif-based analysis.. BMC Genomics. 16 Suppl 5:S12.
Blin K, Dieterich C, Wurmus R, Rajewsky N, Landthaler M, Akalin A.  2015.  DoRiNA 2.0--upgrading the doRiNA database of RNA interactions in post-transcriptional regulation.. Nucleic Acids Res. 43(Database issue):D160-7.
Alon S, Erew M, Eisenberg E.  2015.  DREAM: a webserver for the identification of editing sites in mature miRNAs using deep sequencing data.. Bioinformatics. 31(15):2568-70.
Mullany LE, Wolff RK, Slattery ML.  2015.  Effectiveness and Usability of Bioinformatics Tools to Analyze Pathways Associated with miRNA Expression.. Cancer Inform. 14:121-30.
Steinfeld I, Navon R, Creech ML, Yakhini Z, Tsalenko A.  2015.  ENViz: a Cytoscape App for integrated statistical analysis and visualization of sample-matched data with multiple data types.. Bioinformatics. 31(10):1683-5.
Kim D-K, Lee J, Kim SRom, Choi D-S, Yoon YJin, Kim JHyun, Go G, Nhung D, Hong K, Jang SChul et al..  2015.  EVpedia: a community web portal for extracellular vesicles research.. Bioinformatics. 31(6):933-9.
Kim D-K, Lee J, Simpson RJ, Lötvall J, Gho YSong.  2015.  EVpedia: A community web resource for prokaryotic and eukaryotic extracellular vesicles research.. Semin Cell Dev Biol. 40:4-7.
Barupal JKumar, Saini AKumar, Chand T, Meena A, Beniwal S, Suthar JRam, Meena N, Kachhwaha S, Kothari SLal.  2015.  ExcellmiRDB for translational genomics: a curated online resource for extracellular microRNAs.. OMICS. 19(1):24-30.
Korla PKumar, Cheng J, Huang C-H, Tsai JJP, Liu Y-H, Kurubanjerdjit N, Hsieh W-T, Chen H-Y, Ng K-L.  2015.  FARE-CAFE: a database of functional and regulatory elements of cancer-associated fusion events.. Database (Oxford). 2015
Hoogstrate Y, Jenster G, Martens-Uzunova ES.  2015.  FlaiMapper: computational annotation of small ncRNA-derived fragments using RNA-seq high-throughput data.. Bioinformatics. 31(5):665-73.
Peace RJ, Biggar KK, Storey KB, Green JR.  2015.  A framework for improving microRNA prediction in non-human genomes.. Nucleic Acids Res. 43(20):e138.
Pathan M, Keerthikumar S, Ang C-S, Gangoda L, Quek CYJ, Williamson NA, Mouradov D, Sieber OM, Simpson RJ, Salim A et al..  2015.  FunRich: An open access standalone functional enrichment and interaction network analysis tool.. Proteomics. 15(15):2597-601.
Benito-Martin A, Peinado H.  2015.  FunRich proteomics software analysis, let the fun begin!. Proteomics. 15(15):2555-6.
Xiao Y, Gong Y, Lv Y, Lan Y, Hu J, Li F, Xu J, Bai J, Deng Y, Liu L et al..  2015.  Gene Perturbation Atlas (GPA): a single-gene perturbation repository for characterizing functional mechanisms of coding and non-coding genes.. Sci Rep. 5:10889.
van Dam S, Craig T, de Magalhães JPedro.  2015.  GeneFriends: a human RNA-seq-based gene and transcript co-expression database.. Nucleic Acids Res. 43(Database issue):D1124-32.
Zorc M, Obsteter J, Dovc P, Kunej T.  2015.  Genetic Variability of MicroRNA Genes in 15 Animal Species.. J Genomics. 3:51-6.
Obsteter J, Dovc P, Kunej T.  2015.  Genetic variability of microRNA regulome in human.. Mol Genet Genomic Med. 3(1):30-9.
Luk AChun-Shui, Gao H, Xiao S, Liao J, Wang D, Tu J, Rennert OM, Chan W-Y, Lee T-L.  2015.  GermlncRNA: a unique catalogue of long non-coding RNAs and associated regulations in male germ cell development.. Database (Oxford). 2015:bav044.
Zhang L, Guo J, You Q, Yi X, Ling Y, Xu W, Hua J, Su Z.  2015.  GraP: platform for functional genomics analysis of Gossypium raimondii.. Database (Oxford). 2015:bav047.
Gupta AKumar, Kumar M.  2015.  HPVbase--a knowledgebase of viral integrations, methylation patterns and microRNAs aberrant expression: As potential biomarkers for Human papillomaviruses mediated carcinomas.. Sci Rep. 5:12522.
Dönitz J, Schmitt-Engel C, Grossmann D, Gerischer L, Tech M, Schoppmeier M, Klingler M, Bucher G.  2015.  iBeetle-Base: a database for RNAi phenotypes in the red flour beetle Tribolium castaneum.. Nucleic Acids Res. 43(Database issue):D720-5.
Liu B, Fang L, Wang S, Wang X, Li H, Chou K-C.  2015.  Identification of microRNA precursor with the degenerate K-tuple or Kmer strategy.. J Theor Biol. 385:153-9.
Liu B, Fang L, Liu F, Wang X, Chen J, Chou K-C.  2015.  Identification of real microRNA precursors with a pseudo structure status composition approach.. PLoS One. 10(3):e0121501.

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