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Found 1346 results
2005
Olson AJ, Tully T, Sachidanandam R.  2005.  GeneSeer: a sage for gene names and genomic resources.. BMC Genomics. 6:134.
Santoyo J, Vaquerizas JM, Dopazo J.  2005.  Highly specific and accurate selection of siRNAs for high-throughput functional assays.. Bioinformatics. 21(8):1376-82.
Nam J-W, Shin K-R, Han J, Lee Y, V Kim N, Zhang B-T.  2005.  Human microRNA prediction through a probabilistic co-learning model of sequence and structure.. Nucleic Acids Res. 33(11):3570-81.
Truss M, Swat M, Kielbasa SM, Schäfer R, Herzel H, Hagemeier C.  2005.  HuSiDa--the human siRNA database: an open-access database for published functional siRNA sequences and technical details of efficient transfer into recipient cells.. Nucleic Acids Res. 33(Database issue):D108-11.
Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M.  2005.  Identification of clustered microRNAs using an ab initio prediction method.. BMC Bioinformatics. 6:267.
Lawrence CJ, Seigfried TE, Brendel V.  2005.  The maize genetics and genomics database. The community resource for access to diverse maize data.. Plant Physiol. 138(1):55-8.
Rusinov V, Baev V, Minkov INikiforov, Tabler M.  2005.  MicroInspector: a web tool for detection of miRNA binding sites in an RNA sequence.. Nucleic Acids Res. 33(Web Server issue):W696-700.
Wang X, Zhang J, Li F, Gu J, He T, Zhang X, Li Y.  2005.  MicroRNA identification based on sequence and structure alignment.. Bioinformatics. 21(18):3610-4.
Grün D, Wang Y-L, Langenberger D, Gunsalus KC, Rajewsky N.  2005.  microRNA target predictions across seven Drosophila species and comparison to mammalian targets.. PLoS Comput Biol. 1(1):e13.
Allen E, Xie Z, Gustafson AM, Carrington JC.  2005.  microRNA-directed phasing during trans-acting siRNA biogenesis in plants.. Cell. 121(2):207-21.
Zhang Y.  2005.  miRU: an automated plant miRNA target prediction server.. Nucleic Acids Res. 33(Web Server issue):W701-4.
Liu C, Bai B, Skogerbø G, Cai L, Deng W, Zhang Y, Bu D, Zhao Y, Chen R.  2005.  NONCODE: an integrated knowledge database of non-coding RNAs.. Nucleic Acids Res. 33(Database issue):D112-5.
Brennecke J, Stark A, Russell RB, Cohen SM.  2005.  Principles of microRNA-target recognition.. PLoS Biol. 3(3):e85.
Chan CS, Elemento O, Tavazoie S.  2005.  Revealing posttranscriptional regulatory elements through network-level conservation.. PLoS Comput Biol. 1(7):e69.
Griffiths-Jones S, Moxon S, Marshall M, Khanna A, Eddy SR, Bateman A.  2005.  Rfam: annotating non-coding RNAs in complete genomes.. Nucleic Acids Res. 33(Database issue):D121-4.
Sato K, Sakakibara Y.  2005.  RNA secondary structural alignment with conditional random fields.. Bioinformatics. 21 Suppl 2:ii237-42.
Pang KC, Stephen S, Engström PG, Tajul-Arifin K, Chen W, Wahlestedt C, Lenhard B, Hayashizaki Y, Mattick JS.  2005.  RNAdb--a comprehensive mammalian noncoding RNA database.. Nucleic Acids Res. 33(Database issue):D125-30.
Clote P.  2005.  RNALOSS: a web server for RNA locally optimal secondary structures.. Nucleic Acids Res. 33(Web Server issue):W600-4.
Chalk AM, Warfinge RE, Georgii-Hemming P, Sonnhammer ELL.  2005.  siRNAdb: a database of siRNA sequences.. Nucleic Acids Res. 33(Database issue):D131-4.
Saetrom O, Snøve O, Saetrom P.  2005.  Weighted sequence motifs as an improved seeding step in microRNA target prediction algorithms.. RNA. 11(7):995-1003.
2004
Wang B-B, Brendel V.  2004.  The ASRG database: identification and survey of Arabidopsis thaliana genes involved in pre-mRNA splicing.. Genome Biol. 5(12):R102.
Henschel A, Buchholz F, Habermann B.  2004.  DEQOR: a web-based tool for the design and quality control of siRNAs.. Nucleic Acids Res. 32(Web Server issue):W113-20.
Bonnet E, Wuyts J, Rouzé P, Van de Peer Y.  2004.  Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes.. Proc Natl Acad Sci U S A. 101(31):11511-6.
Rehmsmeier M, Steffen P, Hochsmann M, Giegerich R.  2004.  Fast and effective prediction of microRNA/target duplexes.. RNA. 10(10):1507-17.
John B, Enright AJ, Aravin A, Tuschl T, Sander C, Marks DS.  2004.  Human MicroRNA targets.. PLoS Biol. 2(11):e363.

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