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Found 1346 results
2016
Hao Y, Wu W, Li H, Yuan J, Luo J, Zhao Y, Chen R.  2016.  NPInter v3.0: an upgraded database of noncoding RNA-associated interactions.. Database (Oxford). 2016
Good RT, Varghese T, Golz JF, Russell DA, Papanicolaou A, Edwards O, Robin C.  2016.  OfftargetFinder: a web tool for species-specific RNAi design.. Bioinformatics. 32(8):1232-4.
Huang J, Gutierrez F, Strachan HJ, Dou D, Huang W, Smith B, Blake JA, Eilbeck K, Natale DA, Lin Y et al..  2016.  OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data.. J Biomed Semantics. 7:25.
Ienasescu H, Li K, Andersson R, Vitezic M, Rennie S, Chen Y, Vitting-Seerup K, Lagoni E, Boyd M, Bornholdt J et al..  2016.  On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase.. Database (Oxford). 2016
Karakülah G, Kurtoğlu KYücebilgi, Unver T.  2016.  PeTMbase: A Database of Plant Endogenous Target Mimics (eTMs).. PLoS One. 11(12):e0167698.
Rosenkranz D.  2016.  piRNA cluster database: a web resource for piRNA producing loci.. Nucleic Acids Res. 44(D1):D223-30.
Lorenzetti APR, de Antonio GYA, Paschoal AR, Domingues DS.  2016.  PlanTE-MIR DB: a database for transposable element-related microRNAs in plant genomes.. Funct Integr Genomics. 16(3):235-42.
Yao Y, Ma C, Deng H, Liu Q, Zhang J, Yi M.  2016.  plantMirP: an efficient computational program for the prediction of plant pre-miRNA by incorporating knowledge-based energy features.. Mol Biosyst.
Gurjar AKishor Sin, Panwar ASingh, Gupta R, Mantri SS.  2016.  PmiRExAt: plant miRNA expression atlas database and web applications.. Database (Oxford). 2016
Alaimo S, Giugno R, Acunzo M, Veneziano D, Ferro A, Pulvirenti A.  2016.  Post-transcriptional knowledge in pathway analysis increases the accuracy of phenotypes classification.. Oncotarget.
Leclercq M, Diallo ABanire, Blanchette M.  2016.  Prediction of human miRNA target genes using computationally reconstructed ancestral mammalian sequences.. Nucleic Acids Res.
Chaudhary K, Nagpal G, Dhanda SKumar, Raghava GPS.  2016.  Prediction of Immunomodulatory potential of an RNA sequence for designing non-toxic siRNAs and RNA-based vaccine adjuvants.. Sci Rep. 6:20678.
Roy S, Curry BC, Madahian B, Homayouni R.  2016.  Prioritization, clustering and functional annotation of MicroRNAs using latent semantic indexing of MEDLINE abstracts.. BMC Bioinformatics. 17(Suppl 13):350.
Backes C, Meder B, Hart M, Ludwig N, Leidinger P, Vogel B, Galata V, Roth P, Menegatti J, Grässer F et al..  2016.  Prioritizing and selecting likely novel miRNAs from NGS data.. Nucleic Acids Res. 44(6):e53.
Fahlgren N, Hill ST, Carrington JC, Carbonell A.  2016.  P-SAMS: a web site for plant artificial microRNA and synthetic trans-acting small interfering RNA design.. Bioinformatics. 32(1):157-8.
Meng F, Wang J, Dai E, Yang F, Chen X, Wang S, Yu X, Liu D, Jiang W.  2016.  Psmir: a database of potential associations between small molecules and miRNAs.. Sci Rep. 6:19264.
Kannan L, Ramos M, Re A, El-Hachem N, Safikhani Z, Gendoo DMA, Davis S, Gomez-Cabrero D, Castelo R, Hansen KD et al..  2016.  Public data and open source tools for multi-assay genomic investigation of disease.. Brief Bioinform. 17(4):603-15.
Mao F, Xiao L, Li X, Liang J, Teng H, Cai W, Sun ZSheng.  2016.  RBP-Var: a database of functional variants involved in regulation mediated by RNA-binding proteins.. Nucleic Acids Res. 44(D1):D154-63.
Kim M-su, Hur B, Kim S.  2016.  RDDpred: a condition-specific RNA-editing prediction model from RNA-seq data.. BMC Genomics. 17 Suppl 1:5.
Gama-Castro S, Salgado H, Santos-Zavaleta A, Ledezma-Tejeida D, Muñiz-Rascado L, García-Sotelo JSantiago, Alquicira-Hernández K, Martínez-Flores I, Pannier L, Castro-Mondragón JAbraham et al..  2016.  RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond.. Nucleic Acids Res. 44(D1):D133-43.
Liu W-T, Yang C-C, Chen R-K, Jwo W-S, Wu C-W, Ting W-Y, Shung D-P, Liu C-C, Chen JJW.  2016.  RiceATM: a platform for identifying the association between rice agronomic traits and miRNA expression.. Database (Oxford). 2016
Sun W-J, Li J-H, Liu S, Wu J, Zhou H, Qu L-H, Yang J-H.  2016.  RMBase: a resource for decoding the landscape of RNA modifications from high-throughput sequencing data.. Nucleic Acids Res. 44(D1):D259-65.
The RNAcentral Consortium.  2016.  RNAcentral: a comprehensive database of non-coding RNA sequences.. Nucleic Acids Res.
Garcia-Martin JAntonio, Bayegan AH, Dotu I, Clote P.  2016.  RNAdualPF: software to compute the dual partition function with sample applications in molecular evolution theory.. BMC Bioinformatics. 17(1):424.
Guo L, Du Y, Qu S, Wang J.  2016.  rVarBase: an updated database for regulatory features of human variants.. Nucleic Acids Res. 44(D1):D888-93.

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