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Found 12 results
Filters: Author is Gorodkin, Jan  [Clear All Filters]
2017
Junge A, Refsgaard JC, Garde C, Pan X, Santos A, Alkan F, Anthon C, von Mering C, Workman CT, Jensen LJuhl et al..  2017.  RAIN: RNA-protein Association and Interaction Networks.. Database (Oxford). 2017
2015
Pundhir S, Gorodkin J.  2015.  Differential and coherent processing patterns from small RNAs.. Sci Rep. 5:12062.
2014
Mørk S, Pletscher-Frankild S, Caro APalleja, Gorodkin J, Jensen LJuhl.  2014.  Protein-driven inference of miRNA-disease associations.. Bioinformatics. 30(3):392-7.
2013
Pundhir S, Gorodkin J.  2013.  MicroRNA discovery by similarity search to a database of RNA-seq profiles.. Front Genet. 4:133.
2012
Langenberger D, Pundhir S, Ekstrøm CT, Stadler PF, Hoffmann S, Gorodkin J.  2012.  deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns.. Bioinformatics. 28(1):17-24.
Croft L, Szklarczyk D, Jensen LJuhl, Gorodkin J.  2012.  Multiple independent analyses reveal only transcription factors as an enriched functional class associated with microRNAs.. BMC Syst Biol. 6:90.
Wenzel A, Akbasli E, Gorodkin J.  2012.  RIsearch: fast RNA-RNA interaction search using a simplified nearest-neighbor energy model.. Bioinformatics. 28(21):2738-46.
2011
Seemann SE, Richter AS, Gesell T, Backofen R, Gorodkin J.  2011.  PETcofold: predicting conserved interactions and structures of two multiple alignments of RNA sequences.. Bioinformatics. 27(2):211-9.
Seemann SE, Menzel P, Backofen R, Gorodkin J.  2011.  The PETfold and PETcofold web servers for intra- and intermolecular structures of multiple RNA sequences.. Nucleic Acids Res. 39(Web Server issue):W107-11.
2010
Seemann SE, Richter AS, Gorodkin J, Backofen R.  2010.  Hierarchical folding of multiple sequence alignments for the prediction of structures and RNA-RNA interactions.. Algorithms Mol Biol. 5:22.
2009
Kaczkowski B, Torarinsson E, Reiche K, Havgaard JHull, Stadler PF, Gorodkin J.  2009.  Structural profiles of human miRNA families from pairwise clustering.. Bioinformatics. 25(3):291-4.
2008
Seemann SE, Gorodkin J, Backofen R.  2008.  Unifying evolutionary and thermodynamic information for RNA folding of multiple alignments.. Nucleic Acids Res. 36(20):6355-62.