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mrsFAST-Ultra: a compact, SNP-aware mapper for high performance sequencing applications.. Nucleic Acids Res. 42(Web Server issue):W494-500.
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2014. mrsFAST: a cache-oblivious algorithm for short-read mapping.. Nat Methods. 7(8):576-7.
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2010. A partition function algorithm for interacting nucleic acid strands.. Bioinformatics. 25(12):i365-73.
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2009. Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa.. Genome Res. 18(4):571-84.
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2008. RNA-RNA interaction prediction and antisense RNA target search.. J Comput Biol. 13(2):267-82.
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2006.