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miRSeqNovel

Submitted by ChenLiang on Fri, 09/02/2016 - 21:59

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22609373;

Links: 
https://sourceforge.net/projects/mirseq/files/
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We present miRSeqNovel, an R based workflow for miRNA sequencing data analysis. miRSeqNovel can process both colorspace (SOLiD) and basespace (Illumina/Solexa) data by different mapping algorithms. It finds differentially expressed miRNAs and gives conservative prediction of novel miRNA candidates with customized parameters. miRSeqNovel is freely available at http://sourceforge.net/projects/mirseq/files.[1]

References

  1. miRSeqNovel: an R based workflow for analyzing miRNA sequencing data.,
    Qian, Kui, Auvinen Eeva, Greco Dario, and Auvinen Petri
    , Mol Cell Probes, 2012 Oct, Volume 26, Issue 5, p.208-11, (2012)