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MTide

Submitted by ChenLiang on Fri, 09/02/2016 - 21:59

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Pubmed IDs: 

25256573;

Links: 
http://bis.zju.edu.cn/MTide/
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Small RNA sequencing and degradome sequencing (also known as parallel analysis of RNA ends) have provided rich information on the microRNA (miRNA) and its cleaved mRNA targets on a genome-wide scale in plants, but no computational tools have been developed to effectively and conveniently deconvolute the miRNA-target interaction (MTI).
A freely available package, MTide, was developed by combining modified miRDeep2 and CleaveLand4 with some other useful scripts to explore MTI in a comprehensive way. By searching for targets of a complete miRNAs, we can facilitate large-scale identification of miRNA targets, allowing us to discover regulatory interaction networks.
http://bis.zju.edu.cn/MTide.[1]

References

  1. MTide: an integrated tool for the identification of miRNA-target interaction in plants.,
    Zhang, Zhao, Jiang Li, Wang Jingjing, Gu Peizhen, and Chen Ming
    , Bioinformatics, 2015 Jan 15, Volume 31, Issue 2, p.290-1, (2015)