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Found 14 results
Filters: Author is Stadler, Peter F  [Clear All Filters]
2014
Patra D, Fasold M, Langenberger D, Steger G, Grosse I, Stadler PF.  2014.  plantDARIO: web based quantitative and qualitative analysis of small RNA-seq data in plants.. Front Plant Sci. 5:708.
2012
Langenberger D, Pundhir S, Ekstrøm CT, Stadler PF, Hoffmann S, Gorodkin J.  2012.  deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns.. Bioinformatics. 28(1):17-24.
2011
Fasold M, Langenberger D, Binder H, Stadler PF, Hoffmann S.  2011.  DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments.. Nucleic Acids Res. 39(Web Server issue):W112-7.
Bateman A, Agrawal S, Birney E, Bruford EA, Bujnicki JM, Cochrane G, Cole JR, Dinger ME, Enright AJ, Gardner PP et al..  2011.  RNAcentral: A vision for an international database of RNA sequences.. RNA. 17(11):1941-6.
Lorenz R, Bernhart SH, Siederdissen CHöner Zu, Tafer H, Flamm C, Stadler PF, Hofacker IL.  2011.  ViennaRNA Package 2.0.. Algorithms Mol Biol. 6:26.
2010
Gruber AR, Findeiß S, Washietl S, Hofacker IL, Stadler PF.  2010.  RNAz 2.0: improved noncoding RNA detection.. Pac Symp Biocomput. :69-79.
Huang FWD, Qin J, Reidys CM, Stadler PF.  2010.  Target prediction and a statistical sampling algorithm for RNA-RNA interaction.. Bioinformatics. 26(2):175-81.
2009
Hoffmann S, Otto C, Kurtz S, Sharma CM, Khaitovich P, Vogel J, Stadler PF, Hackermüller J.  2009.  Fast mapping of short sequences with mismatches, insertions and deletions using index structures.. PLoS Comput Biol. 5(9):e1000502.
Kaczkowski B, Torarinsson E, Reiche K, Havgaard JHull, Stadler PF, Gorodkin J.  2009.  Structural profiles of human miRNA families from pairwise clustering.. Bioinformatics. 25(3):291-4.
2008
Hertel J, Hofacker IL, Stadler PF.  2008.  SnoReport: computational identification of snoRNAs with unknown targets.. Bioinformatics. 24(2):158-64.
2006
Hertel J, Stadler PF.  2006.  Hairpins in a Haystack: recognizing microRNA precursors in comparative genomics data.. Bioinformatics. 22(14):e197-202.
Hsu PWC, Da Huang H-, Da Hsu S-, Lin L-Z, Tsou A-P, Tseng C-P, Stadler PF, Washietl S, Hofacker IL.  2006.  miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes.. Nucleic Acids Res. 34(Database issue):D135-9.
2005
Dieterich C, Grossmann S, Tanzer A, Röpcke S, Arndt PF, Stadler PF, Vingron M.  2005.  Comparative promoter region analysis powered by CORG.. BMC Genomics. 6:24.
Washietl S, Hofacker IL, Stadler PF.  2005.  Fast and reliable prediction of noncoding RNAs.. Proc Natl Acad Sci U S A. 102(7):2454-9.