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2017
Karagkouni D, Paraskevopoulou MD, Chatzopoulos S, Vlachos IS, Tastsoglou S, Kanellos I, Papadimitriou D, Kavakiotis I, Maniou S, Skoufos G et al..  2017.  DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA-gene interactions.. Nucleic Acids Res.
2016
Paraskevopoulou MD, Vlachos IS, Karagkouni D, Georgakilas G, Kanellos I, Vergoulis T, Zagganas K, Tsanakas P, Floros E, Dalamagas T et al..  2016.  DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts.. Nucleic Acids Res. 44(D1):D231-8.
Vlachos IS, Vergoulis T, Paraskevopoulou MD, Lykokanellos F, Georgakilas G, Georgiou P, Chatzopoulos S, Karagkouni D, Christodoulou F, Dalamagas T et al..  2016.  DIANA-mirExTra v2.0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data.. Nucleic Acids Res. 44(W1):W128-34.
Georgakilas G, Vlachos IS, Zagganas K, Vergoulis T, Paraskevopoulou MD, Kanellos I, Tsanakas P, Dellis D, Fevgas A, Dalamagas T et al..  2016.  DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators.. Nucleic Acids Res. 44(D1):D190-5.
2015
Vlachos IS, Zagganas K, Paraskevopoulou MD, Georgakilas G, Karagkouni D, Vergoulis T, Dalamagas T, Hatzigeorgiou AG.  2015.  DIANA-miRPath v3.0: deciphering microRNA function with experimental support.. Nucleic Acids Res. 43(W1):W460-6.
Vlachos IS, Paraskevopoulou MD, Karagkouni D, Georgakilas G, Vergoulis T, Kanellos I, Anastasopoulos I-L, Maniou S, Karathanou K, Kalfakakou D et al..  2015.  DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions.. Nucleic Acids Res. 43(Database issue):D153-9.
2014
Georgakilas G, Vlachos IS, Paraskevopoulou MD, Yang P, Zhang Y, Economides AN, Hatzigeorgiou AG.  2014.  microTSS: accurate microRNA transcription start site identification reveals a significant number of divergent pri-miRNAs.. Nat Commun. 5:5700.
2013
Paraskevopoulou MD, Georgakilas G, Kostoulas N, Reczko M, Maragkakis M, Dalamagas TM, Hatzigeorgiou AG.  2013.  DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs.. Nucleic Acids Res. 41(Database issue):D239-45.
Vlachos IS, Hatzigeorgiou AG.  2013.  Online resources for miRNA analysis.. Clin Biochem. 46(10-11):879-900.
2012
Vlachos IS, Kostoulas N, Vergoulis T, Georgakilas G, Reczko M, Maragkakis M, Paraskevopoulou MD, Prionidis K, Dalamagas T, Hatzigeorgiou AG.  2012.  DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways.. Nucleic Acids Res. 40(Web Server issue):W498-504.
Reczko M, Maragkakis M, Alexiou P, Grosse I, Hatzigeorgiou AG.  2012.  Functional microRNA targets in protein coding sequences.. Bioinformatics. 28(6):771-6.
Vergoulis T, Vlachos IS, Alexiou P, Georgakilas G, Maragkakis M, Reczko M, Gerangelos S, Koziris N, Dalamagas T, Hatzigeorgiou AG.  2012.  TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support.. Nucleic Acids Res. 40(Database issue):D222-9.
2011
Reczko M, Maragkakis M, Alexiou P, Papadopoulos GL, Hatzigeorgiou AG.  2011.  Accurate microRNA Target Prediction Using Detailed Binding Site Accessibility and Machine Learning on Proteomics Data.. Front Genet. 2:103.
Maragkakis M, Vergoulis T, Alexiou P, Reczko M, Plomaritou K, Gousis M, Kourtis K, Koziris N, Dalamagas T, Hatzigeorgiou AG.  2011.  DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association.. Nucleic Acids Res. 39(Web Server issue):W145-8.
2010
Alexiou P, Maragkakis M, Papadopoulos GL, Simmosis VA, Zhang L, Hatzigeorgiou AG.  2010.  The DIANA-mirExTra web server: from gene expression data to microRNA function.. PLoS One. 5(2):e9171.
Alexiou P, Vergoulis T, Gleditzsch M, Prekas G, Dalamagas T, Megraw M, Grosse I, Sellis T, Hatzigeorgiou AG.  2010.  miRGen 2.0: a database of microRNA genomic information and regulation.. Nucleic Acids Res. 38(Database issue):D137-41.
2009
Maragkakis M, Alexiou P, Papadopoulos GL, Reczko M, Dalamagas T, Giannopoulos G, Goumas G, Koukis E, Kourtis K, Simossis VA et al..  2009.  Accurate microRNA target prediction correlates with protein repression levels.. BMC Bioinformatics. 10:295.
Papadopoulos GL, Reczko M, Simossis VA, Sethupathy P, Hatzigeorgiou AG.  2009.  The database of experimentally supported targets: a functional update of TarBase.. Nucleic Acids Res. 37(Database issue):D155-8.
2007
Megraw M, Sethupathy P, Corda B, Hatzigeorgiou AG.  2007.  miRGen: a database for the study of animal microRNA genomic organization and function.. Nucleic Acids Res. 35(Database issue):D149-55.
2006
Sethupathy P, Corda B, Hatzigeorgiou AG.  2006.  TarBase: A comprehensive database of experimentally supported animal microRNA targets.. RNA. 12(2):192-7.